glycan
type: Ontology
creator: Daisuke Shinmachi
creator: Hiro Sawaki
creator: Issaku Yamada
creator: Kiyoko Aoki-Kinoshita
creator: Masaaki Matsubara
creator: Matthew Campbell
creator: Philip Toukach
creator: Rene Ranzinger
creator: Shin Kawano
creator: Shujiro Okuda
date: 2013-02-10T23:11:00
version info: 1.2.1

captured by
type: ObjectProperty
type: FunctionalProperty
domain: Evidence Binding
range: Glycan Binder
comment: Object is compounds that have affinity to glycan or glycoconjugate.

catalyzed by
type: ObjectProperty
range: Reaction
comment: Object is a reaction process.

contained in
type: ObjectProperty
inverse of: has motif
domain: Glycan Motif
comment: The subject is a structurally defined motif, and the object is a glycan structure or motif.

degraded by
type: ObjectProperty
sub property of: catalyzed by
range: Glycosyl Hydrolase Reaction
comment: Object is a reaction process, which degrades the subject.

from_sample
type: ObjectProperty
sub property of: topObjectProperty
domain: Referenced Compound
range: Source
comment: A brief descripition of the sample analysed. This may be required if taxon, tissue, and disease are not sufficient. An example may include analysis of a sample with no specified background e.g. commerical project.

glycosylates
type: ObjectProperty
domain: Saccharide
range: Glycosylation Site

has absolute configuration
type: ObjectProperty
type: FunctionalProperty
domain: Configuration
range: Absolute Configuration
comment: Subject is a monosaccharide basetype. The object values for the predicate can be D, L or unknown.

has affinity to
type: ObjectProperty
range: Glycan Binder
comment: Subject is a glycan or glycoconjugate, which non-covalently binds to the object, usually :glycan_binder.

has aglycon
type: ObjectProperty
domain: Glycoconjugate
range: Aglycon
comment: This property is used to specify the aglycon portion of a glycoconjugate compound.

has alias
type: ObjectProperty
type: TransitiveProperty
domain: Monosaccharide
range: Monosaccharide Alias
comment: reference to aliases for the monosaccharide

has alternative name
type: ObjectProperty
type: SymmetricProperty
domain: Referenced Compound
comment: Name of compound. Use if name is not with compliant with Oxford Shorthand format, IUPAC, GlycoCT/WURCS, or Motif/Epitope.

has anomer
type: ObjectProperty
type: FunctionalProperty
domain: Basetype
range: Anomer
comment: Anomeric state of the basetype.

has association
type: ObjectProperty
domain: Referenced Compound

has attached glycan
type: ObjectProperty
domain: Glycoconjugate
comment: This property is used to specify a glycan portion of a glycoconjugate compound.

has basetype
type: ObjectProperty
type: FunctionalProperty
domain: Monosaccharide
range: Basetype
comment: Object is the basetype of the monosaccharide (subject).

has category
type: ObjectProperty
domain: Glycan Database
range: Glycan Database Category
comment: category of a glycan database

has ce electrogram
type: ObjectProperty
sub property of: topObjectProperty
domain: Evidence CE
range: CE Electrogram
comment: Glycan annotation with associated CE electrogram evidence

has ce peak
type: ObjectProperty
sub property of: topObjectProperty
domain: CE Digest Electrogram
domain: CE Electrogram
range: CE Property
comment: Peak description

has code
type: ObjectProperty
sub property of: topObjectProperty
comment: Code for compound. This may be linked with a commerically available compound and its catalogue number or in-house available compound e.g. synthesied standard.

has component
type: ObjectProperty
range: Component
comment: Object is a component, representing the monosaccharide composition of the subject.

has_compound
type: ObjectProperty
domain: Referenced Compound
range: Compound

configuration
type: ObjectProperty
domain: Basetype
range: Configuration
comment: Instance of class is configuration.

has core modification
type: ObjectProperty
domain: Basetype
range: Core Modification
comment: reference to another RDF describing a core modification that is present in this basetype

has_core_modification_type
type: ObjectProperty
type: FunctionalProperty
domain: Core Modification
range: Core Modification Type
comment: Type of the core modification. Instances of class are core modification types.

has default linkage type
type: ObjectProperty
domain: Substituent Type
range: Linkage Type
comment: Instances of this class are linkage type .

has default linkage type2
type: ObjectProperty
domain: Substituent Type
range: Linkage Type
comment: Instances of this class are second linkage type.

has destination organism
type: ObjectProperty
type: FunctionalProperty
domain: Class
  union of: Source Modeled
  union of: Source Synthetic
range: Source Natural
comment: glycan of which organism authors wanted to synthesize or model

has enzyme
type: ObjectProperty
domain: Class
  union of: LC Digest Chromatogram
  union of: Reaction
range: Enzyme
comment: Object is an enzyme, which performs the reaction.

has epitope
type: ObjectProperty
sub property of: has motif
range: Glycan Epitope
comment: The object is a structural motif with biological relevance; subproperty of has_motif.

has evidence
type: ObjectProperty
domain: Referenced Compound
range: Evidence
comment: evidence for a given set of information (glycan, publication). An evidence can be any type of experimental data.

has exoglycosidase chromatogram
type: ObjectProperty
domain: LC Chromatogram
range: LC Digest Chromatogram
comment: Relation to exoglycosidase treated sample

has external substituent
type: ObjectProperty
domain: Monosaccharide Alias
range: Substituent
comment: Reference to a :substituent.

has first configuration
type: ObjectProperty
type: FunctionalProperty
domain: Basetype
range: Configuration
comment: Reference to another RDF resource with URI describing the first monosaccharide configuration

has glycan
type: ObjectProperty
sub property of: has_compound
type: FunctionalProperty
domain: Referenced Compound
comment: The glycan object referenced by this subject.

has glycan format
type: ObjectProperty
domain: Restriction
  some values from: Saccharide
  on property: has glycan format
range: Restriction
  some values from: Carbohydrate Format
  on property: has glycan format
comment: This object property links Glycan class to glycanFormat class

has glycoconjugate sequence
type: ObjectProperty
domain: Motif
range: Glycoconjugate Sequence
comment: Sequence information to object of rdf:type :glycoconjugate_sequence if the subject is part of a glycoconjugate.

has glycosequence
type: ObjectProperty
domain: Motif
range: Glycosequence
comment: glycan sequence information to object of rdf:type :glycosequence representing the subject in a text format.

has glycosylated AA
type: ObjectProperty
domain: Class
  union of: Glycopeptide
  union of: Glycoprotein
range: Glycosylated Amino Acid
comment: This property is used to specify a glycosylated amino acid residue in an object glycoprotein or glycopeptide.

has image
type: ObjectProperty
range: Image
comment: Object is a URI to an image instance describing a graphical representation of the glycan.

has lc chromatogram peak
type: ObjectProperty
domain: LC Chromatogram
range: LC Peak
comment: Peak description

has linkage type
type: ObjectProperty
type: FunctionalProperty
domain: Substituent Linkage
range: Linkage Type
comment: GlycoCT linkage type of the monosaccharide to the substituent

has monosaccharide
type: ObjectProperty
type: FunctionalProperty
domain: Component
range: Monosaccharide
comment: URI to a RDF resource describing the monosaccharide (usually MonosaccharideDB).

has monosaccharide notation scheme
type: ObjectProperty
type: FunctionalProperty
domain: Monosaccharide Alias
range: Monosaccharide Notation Scheme
comment: One of GLYCOSCIENCES, GLYCOCT, IUPAC, CARBBANK, CFG, BCSDB, PDB, or GLYCAM, see http://www.monosaccharidedb.org/notation.action?topic=schemes

has motif
type: ObjectProperty
range: Glycan Motif
comment: The object is a structurally defined motif E.g. for Neo-lacto motif http://jcggdb.jp/idb/motif?id=JCGG-MOTIF3009.rdf inverse of ”contained_in”. should have sequence, composition, image ...

has polymerization degree
type: ObjectProperty
domain: Polysaccharide
range: Polymerization Degree
comment: Used only if the specified glycan structure (subject) itself is the oligomeric part forming a repeating unit. Repeating unit information to object of rdf:type :repeat_count.

has precursor peak
type: ObjectProperty
domain: Evidence MS
range: MS Peak
comment: URI of the precursor peak of a MS^n spectra.

has product
type: ObjectProperty
domain: Reaction
comment: Object is generated by the reaction.

has protein name
type: ObjectProperty
domain: Protein
comment: Protein name in accordance with UniProt accession with information available.

has reference
type: ObjectProperty
domain: Class
  union of: Citation
  union of: Compound
  union of: Evidence
  union of: Source
range: Referenced Compound
comment: Reference between :compound, :citation, :evidence, :source and :referenced_compound.

has relative configuration
type: ObjectProperty
type: FunctionalProperty
domain: Configuration
range: Relative Configuration
comment: IUPAC monosaccharide basetype information. Without absolute configuration D or L

has repeat attribute
type: ObjectProperty
type: FunctionalProperty
domain: Polymerization Degree
range: Repeat Attribute
comment: (min, max, exact, average, unknown) part of repeating unit

has residue
type: ObjectProperty
type: FunctionalProperty
domain: Subspectrum
range: Monosaccharide
comment: Monosaccharide annotation of the subspectrum.

has resource entry
type: ObjectProperty
domain: Class
  union of: Compound
  union of: Referenced Compound
range: Resource Entry
comment: Assigns a resource entry to a compound.

has ring type
type: ObjectProperty
type: FunctionalProperty
domain: Basetype
range: Ring Type
comment: Assigns the ring type to a basetype.

has sample type
type: ObjectProperty
domain: Source Natural
range: Source Sample
comment: Sample type of the source.

has second configuration
type: ObjectProperty
type: FunctionalProperty
domain: Basetype
range: Configuration
comment: Reference to another RDF resource with URI describing the second monosaccharide configuration in case there are more than four stereocenters

has signal
type: ObjectProperty
domain: Subspectrum
range: Signal
comment: Resource to a :signal

has substituent linkage
type: ObjectProperty
domain: Substituent
range: Substituent Linkage
comment: linkage of the substituent

has substituent type
type: ObjectProperty
type: FunctionalProperty
domain: Substituent
range: Substituent Type
comment: linkage type of the substituent

has substitution
type: ObjectProperty
domain: Monosaccharide
range: Substituent
comment: The substituent is linked to the basetype in this monosaccharide.

has substrate
type: ObjectProperty
domain: Reaction
comment: Object is consumed by the reaction.

has symbol format
type: ObjectProperty
type: FunctionalProperty
domain: Image
range: Symbol Format
comment: URL to explanation of symbol? The display style of the glycan. (cfg, uoxf, atoms)

has synthesis type
type: ObjectProperty
type: FunctionalProperty
domain: Source Synthetic
range: Synthetic Type
comment: Allows to specify the synthesis type used to generated the glycan.

has taxon
type: ObjectProperty
type: FunctionalProperty
domain: Source Natural
comment: Species information of the source.

has third configuration
type: ObjectProperty
type: FunctionalProperty
domain: Basetype
range: Configuration
comment: Reference to another RDF resource with URI describing the third monosaccharide configuration in case there are more than eight stereocenters

has unassigned signal
type: ObjectProperty
domain: Evidence NMR
range: Signal
comment: Link to an unassigned signal which is just a chemical shift.

has uniprot accession
type: ObjectProperty
type: FunctionalProperty
type: InverseFunctionalProperty
domain: Class
  union of: Glycopeptide
  union of: Glycoprotein
  union of: Protein
range: Protein
comment: When the subject of this predicate is :glycoprotein, the range instance is equivalent to proteineous part of the subject glycoprotein.

has_uoxf
type: ObjectProperty
sub property of: topObjectProperty
comment: Glycan sequence in a text format.

hosted by
type: ObjectProperty
type: FunctionalProperty
domain: Source Natural
range: Source Natural
comment: Reference to another biological source representing the host organism.

hybrid with
type: ObjectProperty
type: SymmetricProperty
domain: Source Natural
range: Source Natural
comment: An offspring of two different taxons.

in carbohydrate format
type: ObjectProperty
type: FunctionalProperty
domain: Sequence
range: Carbohydrate Format
comment: carbohydrate sequence format of the sequence given in the glycosequence instance

in glycan database
type: ObjectProperty
type: FunctionalProperty
domain: Resource Entry
range: Glycan Database
comment: Glycan is present in the glycan database specified by the URI.

is from profile
type: ObjectProperty
sub property of: topObjectProperty
domain: Evidence
domain: Referenced Compound
range: Referenced Compound
comment: A profile can have many peaks and saccharides. It represents a single LC run (parent or digest).

is from report
type: ObjectProperty
sub property of: topObjectProperty
domain: Referenced Compound
range: Referenced Compound
comment: Reference to a report (internal, contract, method development or similar) with no associated publication.

is from source
type: ObjectProperty
domain: Referenced Compound
range: Source
comment: Source annotation for a referenced compound.

is glycosylated on
type: ObjectProperty
domain: Glycoconjugate
range: Glycosylation Site

modification type
type: ObjectProperty
type: FunctionalProperty
domain: Glycosylated Amino Acid
range: Glycosylation Annotation
comment: Modification type is represented due to biological process, typically N-linked or O-linked.

published in
type: ObjectProperty
type: FunctionalProperty
domain: Class
  union of: Evidence
  union of: Referenced Compound
range: Citation
comment: Reference information for the subject.

synthesized by
type: ObjectProperty
sub property of: catalyzed by
range: Glycosyltransferase Reaction
comment: Object is a reaction process, which synthesizes the subject.

used buffer
type: ObjectProperty
domain: Class
  union of: Evidence NMR
  union of: Reaction
range: Buffer
comment: Link to buffer information, such as http://en.wikipedia.org/wiki/Phosphate_buffered_saline.

used lc gradient
type: ObjectProperty
domain: Class
  union of: Evidence LC
  union of: Evidence LC MS
range: Gradient
comment: Solvent gradient explained by change in composition with respect to time.

used reference standard
type: ObjectProperty
domain: Evidence NMR
range: Compound
comment: reference_standard is the accepted internal/external standard for calibrating chemical shift for NMR spectroscopy.

used software
type: ObjectProperty
domain: Source Modeled
range: Software
comment: Software used to model the molecule.

used solvent
type: ObjectProperty
type: FunctionalProperty
domain: Solvent Part
range: Solvent
comment: The predicate links the solvent part with the actually solvent (such as https://www.ebi.ac.uk/chebi/searchId.do?chebiId=41981). Object is an instance of glycan:solvent.

elucidated
type: DatatypeProperty
type: FunctionalProperty
domain: Referenced Compound
range: boolean
comment: if this glycan was elucidated (rather than just studied) in this publication

has AA sequence
type: DatatypeProperty
type: FunctionalProperty
domain: Class
  union of: Glycopeptide
  union of: Glycoprotein
  union of: Peptide
  union of: Protein
range: string
comment: Amino acid sequence is represented in the standard IUPAC-IUB amino acid code. Even if any modification are known, any modified amino acid residues are represented with a single letter of a nascent residue.

has abbreviation
type: DatatypeProperty
type: FunctionalProperty
domain: Glycan Database
range: string
comment: Abbreviation of the database

has affinity value
type: DatatypeProperty
type: FunctionalProperty
domain: Evidence Binding
range: double
comment: Binding affinity value for the lectin or antibody.

has alias name
type: DatatypeProperty
domain: Monosaccharide Alias
range: string
comment: Alias name of a monosaccharide.

has arabinose unit
type: DatatypeProperty
sub property of: topDataProperty
domain: Evidence CE
domain: Evidence LC
domain: LC Peak
range: double
comment: Structure has an arabinose unit

has average molecular weight
type: DatatypeProperty
type: FunctionalProperty
domain: Monosaccharide
range: double
comment: literal numeric with decimal, calculated from monosaccharide composition with average atomic weight

has basetype id
type: DatatypeProperty
type: FunctionalProperty
domain: Basetype
range: integer
comment: Id of the basetype in MonosaccharideDB.

has basetype linkage position
type: DatatypeProperty
type: FunctionalProperty
domain: Substituent Linkage
range: integer
comment: Linkage position at the basetype.

has cardinality
type: DatatypeProperty
type: FunctionalProperty
domain: Component
range: integer
comment: Number of occurrences of an element (e.g. a monosaccharide) in the subject. This information can be missing in case the cardinality cannot be defined (e.g. repeat units with unknown or under-defined repeats). Missing for non-stoichiometrical residues.

has cardinality per repeat
type: DatatypeProperty
type: FunctionalProperty
domain: Component
range: integer
comment: Number of occurrences of an element (e.g. a monosaccharide) in the repeat unit. Applicable to :repeatUnits only. Missing for non-stoichiometrical residues.

has cell line
type: DatatypeProperty
type: FunctionalProperty
domain: Source Natural
range: anyURI
comment: Cell line information of the source

has cell type
type: DatatypeProperty
type: FunctionalProperty
domain: Source Natural
range: anyURI
comment: Cell type information of the source

has charge
type: DatatypeProperty
domain: MS Peak
range: integer
comment: Charge state of the MS peak

has chemical shift
type: DatatypeProperty
domain: Signal
range: double
comment: chemical shift (may be multiple e.g. for CH2 groups in 1H spectra. May be missing if unknown)

has chemical shift max
type: DatatypeProperty
sub property of: has chemical shift
type: FunctionalProperty
domain: Signal
range: double
property disjoint with: has chemical shift min
comment: Maximum value of chemical shift.

has chemical shift min
type: DatatypeProperty
sub property of: has chemical shift
type: FunctionalProperty
domain: Signal
range: double
comment: Minimum value of chemical shift.

has coupling constant
type: DatatypeProperty
domain: Signal
range: double
comment: values in Hz

has default linkage bondorder
type: DatatypeProperty
domain: Substituent Type
range: float
comment: Object is bond order that is number of linkage in default.

has default linkage bondorder2
type: DatatypeProperty
domain: Substituent Type
range: float
comment: Object is second bond order that is number of linkage in default.

has default linking position
type: DatatypeProperty
domain: Substituent Type
range: integer
comment: A position that is number of linkage in default.

has default linking position2
type: DatatypeProperty
domain: Substituent Type
range: integer
comment: A position that is number of second linkage in default.

has diameter
type: DatatypeProperty
type: FunctionalProperty
domain: LC Column
range: double
comment: diameter of the column in micro meter

has disease
type: DatatypeProperty
domain: Source Natural
range: anyURI
comment: MESH reference for disease

has extended stereocode
type: DatatypeProperty
type: FunctionalProperty
domain: Basetype
range: string
comment: Extended stereocode of the basetype

has fluid
type: DatatypeProperty
domain: Source Natural
range: anyURI
property disjoint with: has tissue
comment: either tissue or fluid

has fragment
type: DatatypeProperty
type: FunctionalProperty
domain: MS Annotation
range: string
comment: sequence as peak annotation

has glucose unit
type: DatatypeProperty
sub property of: topDataProperty
domain: Evidence CE
domain: Evidence LC
domain: LC Peak
range: double
comment: Structure has an glucose unit

has intensity
type: DatatypeProperty
type: FunctionalProperty
domain: MS Peak
range: double
comment: intensity value of the MS peak

has keyword
type: DatatypeProperty
domain: Citation
range: anyURI
comment: Keyword for the publication. Object is a URI in MeSH.

has length
type: DatatypeProperty
type: FunctionalProperty
domain: LC Column
range: double
comment: Length of the column in milli meter

has life stage
type: DatatypeProperty
type: FunctionalProperty
domain: Source Natural
range: anyURI
comment: Life stage information of the source.

has linkage path
type: DatatypeProperty
type: FunctionalProperty
domain: Subspectrum
range: string
comment: path from the reducing end or from the rightmost residue in repeat

has linkage position
type: DatatypeProperty
domain: Monosaccharide
range: integer
comment: Monosaccharide can be linked to other residues via standard glycosidic linkage at the given backbone position.

has manufacturer
type: DatatypeProperty
type: FunctionalProperty
domain: Evidence
range: string
comment: Manufacturer of the device used in the experiment.

has material
type: DatatypeProperty
type: FunctionalProperty
domain: LC Column
range: string
comment: Column packing material

has method
type: DatatypeProperty
domain: Citation
range: anyURI
comment: experimental procedures described in the article

has model
type: DatatypeProperty
type: FunctionalProperty
domain: Evidence
range: string
comment: Model of the device used in the experiment.

has modification position
type: DatatypeProperty
type: FunctionalProperty
domain: Core Modification
range: integer
comment: Position of the modification at the monosaccharide.

has modification position2
type: DatatypeProperty
type: FunctionalProperty
domain: Core Modification
range: integer
comment: Second position of the modification at the monosaccharide (eg. for double bounds)

has monoisotopic molecular weight
type: DatatypeProperty
type: FunctionalProperty
domain: Monosaccharide
range: double
comment: Literal numeric with decimal, calculated from monosaccharide composition with atomic weight of monoisotope.

has msdb id
type: DatatypeProperty
type: FunctionalProperty
domain: Monosaccharide
range: integer
comment: Id of the monosaccharide in MonosaccharideDB.

has multiplicity
type: DatatypeProperty
type: FunctionalProperty
domain: Signal
range: string
comment: single-character literal (S,M,D,T ,Q) or combination

has mz
type: DatatypeProperty
type: FunctionalProperty
domain: MS Peak
range: double
comment: MZ value of the MS peak

has nucleus
type: DatatypeProperty
domain: Evidence NMR
range: string
comment: Nucleus

has organ
type: DatatypeProperty
type: FunctionalProperty
domain: Source Natural
range: anyURI
comment: Organ of the source.

has particle size
type: DatatypeProperty
type: FunctionalProperty
domain: LC Column
range: double
comment: Size of the particle in micro meter.

has peak area
type: DatatypeProperty
type: FunctionalProperty
domain: LC Peak
range: double
comment: Integrated peak area.

has_phase_description
type: DatatypeProperty
sub property of: topDataProperty
domain: Evidence LC
domain: LC Column
range: string
comment: Description / short hand of the phase e.g. HILIC, PGC

has repeat count
type: DatatypeProperty
type: FunctionalProperty
domain: Polymerization Degree
range: positiveInteger
comment: value of repeat_attribute in resource, if known

has retention time
type: DatatypeProperty
type: FunctionalProperty
domain: Class
  union of: LC Peak
  union of: Msn Spectrum
range: double
comment: Retention time of the molecule in the experiment in minutes.

has ring end
type: DatatypeProperty
type: FunctionalProperty
domain: Basetype
range: integer
comment: position of last carbon involved in ring closure

has ring start
type: DatatypeProperty
type: FunctionalProperty
domain: Basetype
range: integer
comment: position of first carbon involved in ring closure

has sequence
type: DatatypeProperty
type: FunctionalProperty
domain: Sequence
range: string
comment: Sequence of the Glycan

has size
type: DatatypeProperty
type: FunctionalProperty
domain: Basetype
range: integer
comment: number of backbone carbon atoms

has stereocode
type: DatatypeProperty
type: FunctionalProperty
domain: Basetype
range: string
comment: Stereocode describing the backbone stereochemistry

has strain
type: DatatypeProperty
type: FunctionalProperty
comment: Object is bacterial strain.

has structure location
type: DatatypeProperty
domain: Referenced Compound
range: string
comment: The location of the referenced compound in a publication (e.g. Figure 1).

has substituent linkage position
type: DatatypeProperty
type: FunctionalProperty
domain: Substituent Linkage
range: integer
comment: Linkage position at the substituent.

has substituent linkage position2
type: DatatypeProperty
type: FunctionalProperty
domain: Substituent Linkage
range: integer
comment: Second linkage position at the substituent.

has substitution name
type: DatatypeProperty
domain: Substituent
range: string
comment: Name of substitution.

has tissue
type: DatatypeProperty
type: FunctionalProperty
domain: Source Natural
range: anyURI
comment: either tissue or fluid

has url template
type: DatatypeProperty
type: FunctionalProperty
domain: Glycan Database
range: string
comment: xsd:string such as http://foo.bar.com/someglycan?id=%s

has valence
type: DatatypeProperty
domain: Substituent
range: integer
comment: Object is a valence of substituent.

has version
type: DatatypeProperty
type: FunctionalProperty
domain: Software
range: string
comment: Version of the software used

is ambiguous
type: DatatypeProperty
type: FunctionalProperty
range: boolean
comment: Boolean indicating whether the subject is a fully defined structure including all linkage information, or not.

is fragment
type: DatatypeProperty
type: FunctionalProperty
domain: Class
  union of: Source Modeled
  union of: Source Synthetic
range: boolean
comment: If the synthesised or modeled molecule is just a fragment or the complete target molecule

is fuzzy
type: DatatypeProperty
domain: Substituent
range: boolean
comment: If a substituent is fuzzy.

is linkable
type: DatatypeProperty
domain: Substituent
range: boolean
comment: If a substituent is linkable.

is missing
type: DatatypeProperty
type: FunctionalProperty
domain: Signal
range: boolean
comment: If true unassigned signal. NO if a signal can not exist, rather than its unknown.

is primary name
type: DatatypeProperty
type: FunctionalProperty
domain: Monosaccharide Alias
range: boolean
comment: indicates whether this is the name that should be used to uniquely identify this monosaccharide in the given :notation_scheme, or whether this is a secondary alias name (e.g. to indicate whether a trivial name or a systematic name is to be used preferentially in case a trivial name exists for this monosaccharide)

is trivial name
type: DatatypeProperty
type: FunctionalProperty
domain: Monosaccharide Alias
range: boolean
comment: Indicates whether this is a trivial name that implies modifications, or a systematic name (e.g. KDO vs. D-3-deoxy-manOct2ulo-onic)

of carbon number
type: DatatypeProperty
type: FunctionalProperty
domain: Signal
range: integer
comment: carbon atom number

ratio
type: DatatypeProperty
type: FunctionalProperty
domain: Solvent Part
range: double
comment: Ratio of a solvent in a solvent mixture. (100 if there is only one solvent)

used amount mg
type: DatatypeProperty
domain: Evidence NMR
range: double
comment: sample weight.

used column temperature
type: DatatypeProperty
type: FunctionalProperty
domain: Class
  union of: Evidence LC
  union of: Evidence LC MS
range: double
comment: Column temperature in C.

used concentration
type: DatatypeProperty
domain: Evidence NMR
range: Literal
comment: sample concentration.

used frequency
type: DatatypeProperty
domain: Evidence NMR
range: double
comment: frequency of NMR spectrometer.

used lc flow rate
type: DatatypeProperty
type: FunctionalProperty
domain: Class
  union of: Evidence LC
  union of: Evidence LC MS
range: string
comment: Flow rate refers to the flow of mobile phase through the column and is measured in ml/min.

used lc run time
type: DatatypeProperty
type: FunctionalProperty
domain: Gradient
range: string
comment: Runtime of the LC

used ph
type: DatatypeProperty
type: FunctionalProperty
domain: Evidence NMR
range: double
comment: pH of solution

used temperature
type: DatatypeProperty
type: FunctionalProperty
domain: Evidence NMR
range: string
comment: value or range in K (literal)

issued
type: DatatypeProperty
domain: Citation
range: integer
comment: Publication year

CE Digest Electrogram
type: Class
subclass of: CE Property

CE Electrogram
type: Class
subclass of: CE Property

CE Property
type: Class
comment: Class that contains Capillary Electrophoresis properties.

Carbohydrate Format
type: Class
comment: Instances of this class are the carbohydrate sequence formats.

Citation
type: Class
equivalent class: Citation
comment: Initial class name is capitalized. "glycan:Citation"

Evidence HPLC
type: Class
subclass of: Evidence LC
comment: Normal Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites run on a HPLC instrument. Retention times are compared to a dextran ladder and represented as GU values.

Evidence RPLC
type: Class
subclass of: Evidence LC
comment: Reverse Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites. Retention times are normally compared with an arabinose ladder and assigned arabinose units (AU).

Evidence UPLC
type: Class
subclass of: Evidence LC
comment: Normal Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites run on a UPLC instrument. Retention times are compared to a dextran ladder and represented as GU values.

Glycam
type: Class
subclass of: Carbohydrate Format
comment: This class depicts a GlyCAM format of glycans

GlycoCT
type: Class
subclass of: Carbohydrate Format
comment: This class depicts a GlycoCT format of glycans

Glycoprotein
type: Class
equivalent class: Glycoprotein
subclass of: Glycoconjugate
label: Initial class name is capitalized. "glycan:Glycoprotein

Glycosylation Site
type: Class
subclass of: Glycosylation Annotation
comment: A glycosylation site is an amino acid residue within a peptide that accepts oligosaccharide via amide linkage.

IupacCondensed
type: Class
subclass of: Carbohydrate Format
comment: This class depicts a IUPAC condensed format of glycans

IupacExtended
type: Class
subclass of: Carbohydrate Format
comment: This class depicts a IUPAC Extended format of glycans.

LinearCode
type: Class
subclass of: Carbohydrate Format
comment: This class depicts a Linear Code format of glycans

N-glycan
type: Class
subclass of: Saccharide
comment: A subclass of saccharide primarily found on eukaryotic glycoproteins. This class of glycan typically contains a specific glycan substructure motif (http://jcggdb.jp/idb/motif?id=JCGG-MOTIF1001), and the reducing terminal GlcNAc of the glycan is attached to the N-atom of an asparagine residue of the protein in a beta configuration. A class of glycoconjugate including dolichyl-diphospho esters also involves the same glycan motif, but they are attached in an alpha configuration. The dolichyl-diphosphooligosaccharides are precursors or intermediates in the protein N-glycosylation process, by which the specific dolichyl-diphosphooligosaccharide (http://jcggdb.jp/idb/jcggdb/JCGG-STR015745) is transferred from the dolichyl phospohate ester to an asparagine residue of the protein by an oligosacchayl transferase (GO:0004579).

O-glycan
type: Class
subclass of: Saccharide
comment: A subclass of saccharide primarily found in glycoproteins This class is subdivided into a variety of subclasses due to its expression in a variety of biological sources. In terms of structure, O-glycans either consist of a GalNAc, Man, Fuc, Glc residue at the reducing end attached to a serine, threonine, hydroxylysine or hydroxyproline residue in a protein sequence in an alpha configuration.

Referenced Compound
type: Class
equivalent class: Referenced Compound
comment: Initial class name is capitalized. "glycan:Referenced_compound"

Saccharide
type: Class
subclass of: Compound
comment: Instances of this class represent the molecule information of the glycans. That includes chemical composition, molecular weight but also related information such as images of the glycans.

Source Natural
type: Class
equivalent class: Source Natural
subclass of: Source
comment: Initial class name is capitalized. "glycan:Source_natural"

Wurcs
type: Class
subclass of: Carbohydrate Format
comment: This class depicts a WURCS format of glycans

Absolute Configuration
type: Class
subclass of: Monosaccharide Property
comment: Absolute configuration of a monosaccharide basetype. Possible values are D, L or Unknown.

Adduct
type: Class
subclass of: MS Property

Adduct Ion
type: Class
subclass of: MS Property

Aglycon
type: Class
subclass of: Compound
comment: Instances of this class represent the aglyca which are covalently attached to the glycans. It contains information about the aglycon, the linkage position in aglycon and glycan.

Amino Acid
type: Class
subclass of: Compound

Anomer
type: Class
subclass of: Monosaccharide Property
comment: Anomer of a monosaccharide. Possible values are alpha, beta, unknown or none.

Antibody
type: Class
subclass of: Glycan Binder
comment: A subclass of glycan_binder which binds to an epitope; in this namespace, this is a glycoepitope, which may be a (part of a) glycan or a part of a glycoconjugate.

Basetype
type: Class
subclass of: Monosaccharide Property
comment: Basetype of the monosaccharide in accordance to GlycoCT and MonosaccharideDB definitions.

Biological Repeat Unit
type: Class
subclass of: Motif
comment: A biological repeat unit contains the monosaccharides of the repetitive oligosaccharide unit in the arrangement as they are synthesized.

Buffer
type: Class
subclass of: Role
comment: A buffer is an aqueous solution consisting of a mixture of a weak acid and its conjugate base or a weak base and its conjugate acid.

Chemical Release
type: Class
subclass of: Glycan Release
comment: Release of glycan that is used chemical reaction.

Chemical Repeat Unit
type: Class
subclass of: Motif
comment: A chemical repeat unit is generated when a polysaccharide is chopped down for the analysis. The sequence of the oligomer is based on the reaction chopping down the glycan and may not represent the biological repeat unit.

Citation
type: Class
comment: References are publications related to the glycan structures or features. This can be journal papers, book chapters, conference articles and so on.

Component
type: Class
subclass of: Thing
subclass of: Restriction
  some values from: Monosaccharide
  on property: has monosaccharide
comment: Components are used to specify the composition of glycans. A component has a reference to the molecule (monosaccharide, substituent) and a number of occurrences for this molecule in the glycan.

Compound
type: Class
comment: Superclass of types of glycan related molecules and fragments.

Configuration
type: Class
subclass of: Monosaccharide Property
comment: Configuration of a monosaccharide. Each monosaccharide can have several configurations (e.g. dgro-dgal). Each configuration consist of a absolute configuration and a relative configuration.

Core Modification
type: Class
subclass of: Monosaccharide Property
comment: Core modification of a monosaccharide. A core modification consists of a modification type and the position(s) at which this modification happened.

Core Modification Type
type: Class
subclass of: Monosaccharide Property
comment: List of core modifications that can appear on a monosaccharide.

Cyclic Glycan
type: Class
subclass of: Saccharide
comment: Cyclic glycans are a special form of glycans which are rarely found in nature. As implied by the name, they form cyclic structures, in contrast to the branched tree structures of commonly known glycans.

Enzymatic Release
type: Class
subclass of: Glycan Release
comment: Release of glycan by an enzymatic reaction.

Enzyme
type: Class
subclass of: Role
comment: Enzyme that take part in synthesis anddegradation of glycan.

Evidence
type: Class
comment: An evidence is any kind of experimental data that can be linked to glycans. These are mainly experiments that elucidate the carbohydrate structure or feature but can also include experiments for creating carbohydrates for example by synthesis.

Evidence IGOT
type: Class
subclass of: Evidence LC MS
comment: Is an IGOT experiment, subclass of glycan:evidence_lc_ms. IGOT experiment is a procedure for the large-scale identification of N-glycosylated proteins, with isotope-coded glycosylation-site-specific tagging. (PMID: 12754521)

Evidence Binding
type: Class
subclass of: Evidence
comment: Entities of this class represent molecular interactions between instances of glycan:saccharide and glycan:glycan_binder, elucidated by experimental results.

Evidence Binding Antibody
type: Class
subclass of: Evidence Binding
comment: Entities of this class represent molecular interactions between instances of epitope and antibody, elucidated by experimental results.

Evidence Binding Lectin
type: Class
subclass of: Evidence Binding
comment: Entities of this class represent molecular interactions between instances of glycan and lectin, elucidated by experimental results.

Evidence CE
type: Class
subclass of: Evidence
comment: Experiments using capillary electrophoresis to identify and characterize carbohydrate structures.

Evidence LC
type: Class
subclass of: Evidence
comment: Experiments using LC techniques to identify and characterize carbohydrates or used for separating glycans by charge or other retention properties.

Evidence LC MS
type: Class
subclass of: Evidence MS

Evidence MS
type: Class
subclass of: Evidence
comment: Experiments using mass spectrometry to identify the carbohydrate structures.

Evidence NMR
type: Class
subclass of: Evidence
comment: Experiments using NMR to identify the carbohydrate structure.

Evidence Type
type: Class
subclass of: Thing
comment: List of evidence types.

Glycan Binder
type: Class
subclass of: Role
comment: A class of compound that has affinity to a glycan or glycoconjugate. Usually a reference to a lectin, virus, bacteria, etc.

Glycan Database
type: Class
subclass of: Thing
comment: A class representing databases that store glycans and related information. If possible, owl:sameAs should be used referencing the biosharing entry for this database.

Glycan Database Category
type: Class
subclass of: Thing
comment: Instances of this class are the categories for the classification of glycan databases.

Glycan Epitope
type: Class
subclass of: Glycan Motif
comment: A glycan epitope is a special motif which has a known biological function.

Glycan Motif
type: Class
subclass of: Motif
comment: A glycan motif is a sub-structure of glycans that has been named because of its frequent appearance or because of the biological meaning.

Glycan Release
type: Class
subclass of: Sample Preparation
comment: A class for process of glycan release, including chemical and enzymatic reaction.

Glycoconjugate
type: Class
subclass of: Compound
comment: Superclass of biomolecules consisting of a glycan part and an aglycon part, that are covalently attached to each other.

Glycoconjugate Sequence
type: Class
subclass of: Sequence
comment: Sequence of the glycoconjugate that includes the carbohydrate and the aglyca. Predicates should be selected based on the format used to represent the structure.

Glycolipid
type: Class
subclass of: Glycoconjugate
comment: Lipid with saccharide(s) attached by glycosidic bond(s).

Glycopeptide
type: Class
subclass of: Glycoconjugate
comment: A class involves artificial degradation products of glycoproteins with protease digestion, which typically results from a proteomics experiment. There are reasons or traces that at least one amino acid residue of the peptide is glycosylated.

Glycoprotein
type: Class
subclass of: Glycoconjugate
comment: A compound that consists of protein and glycan parts; they are covalently attached to each other by a glycosidic bond. There are reasons or traces that at least one amino acid residue of the protein is glycosylated.

Glycosequence
type: Class
subclass of: Sequence
comment: Sequence of the glycan in a specified sequence format.

Glycoside
type: Class
subclass of: Glycoconjugate

Glycosyl Hydrolase Reaction
type: Class
subclass of: Reaction
comment: Instances of this class are glycosyl hydrolase reactions which releases monosaccharide or oligosaccharides from the glycan or glycoconjugate.

Glycosylated Amino Acid
type: Class
subclass of: Glycoconjugate
comment: An amino acid residue, in a glycoprotein or glycopeptide sequence, that a glycan is covalently attached. To specify glycosylation type or bond of glycoprotein.

Glycosyltransferase Reaction
type: Class
subclass of: Reaction
comment: Instances of this class are glycosyltransferase reactions that build up glycans or glycoconjugates by attaching additional monosaccharides or oligosaccharides to them.

Gradient
type: Class
subclass of: LC Property

Image
type: Class
subclass of: Image
comment: Image class for representing glycan images.

LC Chromatogram
type: Class
subclass of: LC Property

LC Column
type: Class
subclass of: LC Property

LC Digest Chromatogram
type: Class
subclass of: LC Property

LC Peak
type: Class
subclass of: LC Property

LC Property
type: Class
comment: Class that contains Liquid Chromatography properties such as gradient, Lc column.

Lectin
type: Class
subclass of: Glycan Binder
comment: A class of protein that binds to glycans but is neither an antibody nor an enzyme.

Linkage Type
type: Class
subclass of: Monosaccharide Property
comment: List of linkage types that can occur on the monosaccharide side of monosaccharide to substituent linkages.

Lipid
type: Class
subclass of: Aglycon
disjoint with: Class
  union of: Peptide
  union of: Protein

Mass Spectrometry Device
type: Class
subclass of: MS Property

Mass Spectrum
type: Class
subclass of: MS Property

Monosaccharide
type: Class
subclass of: Saccharide
comment: Instances of this class represent monosaccharides and their information. These monosaccharides are used to specify the composition of glycans, referenced by glycan:component. Sample URI: http://www.monosaccharidedb.org/rdf/monosaccharide.action?name=o-dall-HEX-0:0

Monosaccharide Alias
type: Class
subclass of: Monosaccharide Property
comment: Alternative names for the monosaccharide in different databases or resources. The aliases consist of the name and the monosaccharide notation scheme.

Monosaccharide Notation Scheme
type: Class
subclass of: Monosaccharide Property
comment: List of monosaccharide notation scheme. One monosaccharide can have several different names depending on the notation scheme.

Monosaccharide Property
type: Class
comment: Class that contains all monosaccharides properties such as anomer, basetype etc.

Motif
type: Class

MS Annotation
type: Class
subclass of: MS Property

MS Fragment Type
type: Class
subclass of: MS Property

MS Peak
type: Class
subclass of: MS Property
comment: Instances represent a peak in a mass spectrometry data consisting of an m/z value, intensity value and optional a charge state.

MS Property
type: Class
comment: Class that contains Mass Spectrometry properties such as adduct, adduct ion etc.

Msn Spectrum
type: Class
subclass of: Mass Spectrum

Neutral Loss
type: Class
subclass of: MS Property

NMR Property
type: Class
comment: Parentclass for all classes used in NMR evidences.

Peptide
type: Class
subclass of: Aglycon
disjoint with: Class
  union of: Lipid
  union of: Protein
comment: Part of a protein amino acid sequence generated by digestion for analysis.

Polymerization Degree
type: Class
subclass of: Thing
comment: A repeat is a property of a polysaccharide that specifies how often the oligomer part is repeated to form the polysaccharide.

Polysaccharide
type: Class
subclass of: Saccharide
comment: Polysaccharides are a special form of glycans that consist of large repetitive oligosaccharide units. Often the exact number of repetitions cannot be specified because the experimental technique does not allow this or because the number of repetition in nature varies.

Profile Spectrum
type: Class
subclass of: Mass Spectrum

Protein
type: Class
equivalent class: Protein
subclass of: Aglycon
disjoint with: Class
  union of: Lipid
  union of: Peptide
comment: Proteinous part of a glycoprotein that is equivalent to the nascent peptide or protein entities found in UniProt or other protein databases.

Reaction
type: Class
comment: Class for reaction process to create or degrade glycans or glycoconjugates.

Referenced Compound
type: Class
comment: Previously correlation instances, which connects a compound class and other information (source, references, evidence) that belong to one data set. That allows to specify that a compound instance, which has been found in a certain source was published by a certain publication.

Relative Configuration
type: Class
subclass of: Monosaccharide Property
comment: List of relative monosaccharide configurations according to IUPAC.

Repeat Attribute
type: Class
comment: List of possible attributes to specify the repeat count. Possible values are average, exact, minimum, maximum or unknown.

Resource Entry
type: Class
subclass of: Thing
comment: A resource entry describes an entry about the glycan in another database.

Ring Type
type: Class
subclass of: Monosaccharide Property
comment: Ringtype of a basetype.

Role
type: Class
comment: Classification hierarchy for molecular functions.

Sample Preparation
type: Class
comment: A process which is the syntesis or preparation of sample for glycan analysis.

Sequence
type: Class
subclass of: Thing
comment: A sequence is the textual description of a molecule. For example FASTA sequences for proteins / peptides.

Signal
type: Class
subclass of: NMR Property
comment: A signal is a NMR data point.

Software
type: Class
comment: Software that has been utilized for the glycan. For example software used to model the glycan.

Solvent
type: Class
subclass of: Role
comment: A solvent is a substance that dissolves a solute (a chemically different liquid, solid or gas), resulting in a solution.

Solvent Part
type: Class
comment: A solvent can consist of a mixture of different molecules. For each molecule a solvent part with the ratio and the molecule is created.

Source
type: Class
subclass of: Thing
comment: Source of the glycan or glycoconjugate. The source can be a biological organism that the compound was found in, a synthesis procedure trying to reproduce a natural glycan or a modeling approach for the glycan.

Source Modeled
type: Class
subclass of: Source
comment: Class for modeled source. Instance contain information about the software used for modeling and the target organism.

Source Natural
type: Class
subclass of: Source
comment: Class for sources from biological organism. Instances contain information about the species, cell type, tissue and so on.

Source Sample
type: Class
subclass of: Source
comment: Class for source from sample. Instance contain sample type.

Source Synthetic
type: Class
subclass of: Source
comment: Class for source for synthetic glycans. In contains information about the type of synthesis approach used and if applicable the original biological source that was tried to mimic.

Subspectrum
type: Class
subclass of: NMR Property
subclass of: Restriction
  some values from: Signal
  on property: has signal
comment: Subspectrum of NMR data. It contains the annotated signals.

Substituent
type: Class
subclass of: Monosaccharide Property
comment: Substition of a monosaccharide by another molecule. The substituent consists of the substituent type and the linkage between monosaccharide and substituent. For example: http://www.monosaccharidedb.org/rdf/substituent/ethyl.rdf

Substituent Linkage
type: Class
subclass of: Monosaccharide Property
comment: Linkage between a monosaccharide basetype and a substituent. It consist of the linkage position on the basetype side and the substituent side, and of the linkage type.

Substituent Type
type: Class
subclass of: Monosaccharide Property
comment: List of substituent types possible on monosaccharides.

Sulfotransferase Reaction
type: Class
subclass of: Reaction
comment: Instances of this class are sulfotransferase reactions that modifies glycans or glycoconjugates by attaching sulfuric moiety to them.

Symbol Format
type: Class
comment: Graphical symbol formats used to represent glycans. This includes the symbol format form the CFG and from UOXF.

Synthetic Type
type: Class
comment: Type of synthesis used for creating the glycan. Possible values are chemical synthesis, enzymatic synthesis and chemoenzymetic synthesis.

Ionization Type
type: Class
comment: PSI: The method by which gas phase ions are generated from the sample.

Instrument Model
type: Class
comment: PSI: Instrument model name not including the vendor's name.

Mass Analyzer Type
type: Class
comment: PSI: Mass analyzer separates the ions according to their mass-to-charge ratio.

Glycosylation Annotation
type: Class
comment: Uniprot term for Glycosylation type (e.g. N-glycosylation)

Protein
type: Class
subclass of: Aglycon
comment: Uniprot protein class.

Taxon
type: Class
comment: Uniprot taxon class.

Image
type: Class
comment: Image class.

D2O
type: NamedIndividual
type: Solvent
comment: Heavy water, formally called deuterium oxide. Deuterium oxide is used in NMR spectroscopy when the solvent of interest is water and the nuclide of interest is hydrogen.

DMSO
type: NamedIndividual
type: Solvent
comment: Dimethyl sulfoxide (DMSO) is an organosulfur compound with the formula (CH3)2SO. This colorless liquid is an important polar aprotic solvent that dissolves both polar and nonpolar compounds and is miscible in a wide range of organic solvents as well as water.

H2O
type: NamedIndividual
type: Solvent
comment: Water

PNGaseA release
type: NamedIndividual
type: Enzymatic Release
comment: Release of glycan that is used PNGaseA.

PNGaseF release
type: NamedIndividual
type: Enzymatic Release
comment: Release of glycan that is used PNGaseF.

alpha1-2,4,6 Fucosidase
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan(s) treated with alpha1-2,4,6 Fucosidase that catalyses the hydrolysis of α1-2, α1-4, and α1-6 linked L-fucopyranosyl residues
comment: Glycan(s) treated with alpha1-3,4 Fucosidase that catalyses the hydrolysis of α1-3 and α1-4 linked fucose residues
label: alpha1-3,4 Fucosidase

alpha1-3,4,6 Galactosidase
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan(s) treated with alpha1-3,6 Galactosidase that catalyses the hydrolysis of α1-3,6 linked D-galactopyranosyl residues
comment: Glycans treated with alpha1-3,4,6 Galactosidase that catalyses the hydrolysis of α1-3, α1-4, and α1-6 linked D-galactopyranosyl residues
label: alpha1-3,6 Galactosidase

alpha1-2,3 Mannosidase
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan(s) treated with alpha1-2,3 Mannosidase that catalyses the hydrolysis of α1-2 and α1-3 linked D-Mannopyranosyl residues

alpha2-3,6,8 Neuraminidase
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan(s) treated with alpha2-3,6,8 Neuraminidase that removes α2-3, α2-6, and α2-8 linked N-acetyl-neuraminic acid residues

alpha2-3,6,8,9 Neuraminidase A
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan(s) treated with alpha2-3,6,8,9 Neuraminidase A that removed all terminal sialic acids. Note some enzymes release α2-3 and α2-6 linkages at a higher rate than α2-8 and α2-9.

dexter
type: NamedIndividual
type: Absolute Configuration

laevus
type: NamedIndividual
type: Absolute Configuration

unknown
type: NamedIndividual
type: Absolute Configuration

H+
type: NamedIndividual
type: Adduct Ion

Na+
type: NamedIndividual
type: Adduct Ion

Alanine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

allo
type: NamedIndividual
type: Relative Configuration

alpha-N-acetylgalactosaminidase
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan(s) treated with alpha-N-acetylgalactosaminidase that catalyzes the hydrolysis of α-linked D-N-acetylgalactosamine

alpha1-2 Fucosidase
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan(s) treated with alpha1-2 Fucosidase that catalyses the hydrolysis of linear α1-2 linked L-fucopyranosyl residues

alpha1-6 Mannosidase
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan(s) treated with alpha1-6 Mannosidase that removes α1-6 linked D-mannopyranosyl residues.

alpha2-3 Neuraminidase
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan(s) treated with alpha2-3 Neuraminidase that catalyses the hydrolysis of α2-3 N-acetyl-neuraminic acid residues from oligosaccharides. Note some α2-6 linked removed at a lower rate.

alpha2-3 Neuraminidase S
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan treated with alpha2-3 Neuraminidase S

altro
type: NamedIndividual
type: Relative Configuration

2-aminoacridone
type: NamedIndividual
type: Label
comment: Glycan labelled with 2-aminoacridone

2-aminobenzamide
type: NamedIndividual
type: Label
comment: Glycan labelled with 2-aminobenzamide

2-aminobenzoic acid
type: NamedIndividual
type: Label
comment: Glycan labelled with 2-aminobenzoic acid

2-aminopyridine
type: NamedIndividual
type: Label
comment: Glycan labelled with 2-aminopyridine

alpha
type: NamedIndividual
type: Anomer

beta
type: NamedIndividual
type: Anomer

none
type: NamedIndividual
type: Anomer

unknown
type: NamedIndividual
type: Anomer

arabino
type: NamedIndividual
type: Relative Configuration

arginine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

asparagine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

aspartic acid
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

beta-N-Acetylglucosaminidase
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan(s) treated with beta-N-Acetylglucosaminidase that catalyses the hydrolysis of terminal, non-reducing β-N-Acetylglucosamine residues

beta-N-Acetylglucosaminidase S
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan treated with beta-N-Acetylglucosaminidase S

beta-N-Acetylhexosaminidase
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan treated with beta-N-Acetylhexosaminidase that catalyses the hydrolysis of terminal β-D-N-acetyl-galactosamine and glucosamine residues from oligosaccharides.

beta1-3 Galactosidase
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan(s) treated with beta1-3 Galactosidase that catalyses the hydrolysis of β1-3 D-galactopyranosyl residues. Some enzymes known to cleave β1-6 but a lower rate.

beta1-4 Galactosidase
type: NamedIndividual
type: Glycosidase Treatment
comment: Glycan(s) treated with beta1-4 Galactosidase that catalyses the hydrolysis of β1-4 linked D-galactopyranosyl residues.

beta elimination
type: NamedIndividual
type: Chemical Release
comment: Beta elimination that released glycan from glycoconjugate.

carbbank
type: NamedIndividual
type: Carbohydrate Format

csdb
type: NamedIndividual
type: Carbohydrate Format

glycoct
type: NamedIndividual
type: Carbohydrate Format

glyde2
type: NamedIndividual
type: Carbohydrate Format

iupac condensed
type: NamedIndividual
type: Carbohydrate Format

iupac extended
type: NamedIndividual
type: Carbohydrate Format

iupac short
type: NamedIndividual
type: Carbohydrate Format

kcf
type: NamedIndividual
type: Carbohydrate Format

linearcode
type: NamedIndividual
type: Carbohydrate Format

linucs
type: NamedIndividual
type: Carbohydrate Format

wurcs
type: NamedIndividual
type: Carbohydrate Format

x
type: NamedIndividual
type: Configuration

acid
type: NamedIndividual
type: Core Modification Type
comment: Carboxyl (COOH) group.

aldi
type: NamedIndividual
type: Core Modification Type
comment: Alditol: Reduction of the aldehyde group to CH2OH.

anhydro
type: NamedIndividual
type: Core Modification Type
comment: Intramolecular anhydride.

deoxy
type: NamedIndividual
type: Core Modification Type
comment: Deoxygenation of a position: The OH group is removed and replaced by a hydrogen atom.

en
type: NamedIndividual
type: Core Modification Type
comment: Double bond in the basetype backbone. This modification implies that - unless explicitly stated with a deoxy modification - hydroxyl groups are preserved.

enx
type: NamedIndividual
type: Core Modification Type
comment: Double bond in the basetype backbone with unknown deoxygenation pattern.

geminal
type: NamedIndividual
type: Core Modification Type
comment: Loss of stereochemistry due to identical substituents with DEOXY and H_LOSE linkage types at a single position.

keto
type: NamedIndividual
type: Core Modification Type
comment: A carbonyl group in the open chain version of a monosaccharide. This modification is omitted if it is only present at position 1 (standard aldose).

sp
type: NamedIndividual
type: Core Modification Type
comment: Triple bond to a substituent.

sp2
type: NamedIndividual
type: Core Modification Type
comment: Double bond to a substituent.

yn
type: NamedIndividual
type: Core Modification Type
comment: Triple bond in the basetype backbone.

cysteine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

D-Alanine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-arginine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-asparagine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-aspartic acid
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-cysteine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-glutamic acid
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-glutamine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-glycine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-histidine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-isoleucine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-leucine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-lysine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-methionine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-phenylalanine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-proline
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-selenocysteine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-serine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-threonine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-tryptophan
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-tyrosine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

d-valine
type: NamedIndividual
type: Amino Acid
has absolute configuration: dexter

BCSDB
type: NamedIndividual
type: Glycan Database
has category: bibliography
has category: structure
has category: experimental
has category: taxonomy
has abbreviation: BCSDB
has url template: http://csdb.glycoscience.ru/bacterial/core/search_id.php
name: Bacterial Carbohydrate Structure DataBase

CarbBank
type: NamedIndividual
type: Glycan Database
has abbreviation: CCSD
has url template: http://www.genome.jp/dbget-bin/www_bget
name: Complex Carbohydrate Structure Database

Carint
type: NamedIndividual
type: Glycan Database
has category: carbohydrate interaction
has abbreviation: Carint
has url template: http://ws.glyconavi.org/carint/entry.php
name: Carbohydrate Interaction Database

bibliography
type: NamedIndividual
type: Glycan Database Category

structure
type: NamedIndividual
type: Glycan Database Category
comment: Database containing glycan structure information.

carbohydrate conformation
type: NamedIndividual
type: Glycan Database Category
comment: Database containing carbohydrate conformation

carbohydrate interaction
type: NamedIndividual
type: Glycan Database Category

chemical compound
type: NamedIndividual
type: Glycan Database Category
comment: Database of carbohydrates at the atomic level.

experimental
type: NamedIndividual
type: Glycan Database Category
comment: Database of glycomics experiments such as NMR, MS, array data, etc-

glycan binding protein
type: NamedIndividual
type: Glycan Database Category

glycoenyzme
type: NamedIndividual
type: Glycan Database Category

monosaccharide
type: NamedIndividual
type: Glycan Database Category
comment: Database containing monosaccharide information.

synthesis
type: NamedIndividual
type: Glycan Database Category

taxonomy
type: NamedIndividual
type: Glycan Database Category
comment: Taxonomical information regarding glycans are available.

tissue
type: NamedIndividual
type: Glycan Database Category

CAZy
type: NamedIndividual
type: Glycan Database
has category: glycoenyzme
has abbreviation: CAZy
has url template: http://www.cazy.org/[
name: Carbhoydrate-Active enZYmes

CFG
type: NamedIndividual
type: Glycan Database
has category: structure
has abbreviation: CFG
has url template: http://www.functionalglycomics.org/glycomics/CarbohydrateServlet
name: Consortium for Functional Glycomics Structure Database

CfgGBP
type: NamedIndividual
type: Glycan Database
has category: glycan binding protein
has abbreviation: CfgGBP
has url template: http://www.functionalglycomics.org/glycomics/molecule/jsp/viewGbpMolecule.jsp
name: CFG Glycan Binding Proteins

CfgGlycoenzyme
type: NamedIndividual
type: Glycan Database
has category: glycoenyzme
has abbreviation: CfgGlycoenzyme
has url template: http://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/viewGlycoEnzyme.jsp
name: CFG Glycosyltransferases DB

ChEBI
type: NamedIndividual
type: Glycan Database
has category: chemical compound
has abbreviation: ChEBI
has url template: http://www.ebi.ac.uk/chebi/advancedSearchFT.do
name: Chemical Entities of Biological Interest

ChemSpider
type: NamedIndividual
type: Glycan Database
has category: chemical compound
has abbreviation: ChemSpider
has url template: http://www.chemspider.com/Chemical-Structure.[

GlyAffinity
type: NamedIndividual
type: Glycan Database
has abbreviation: GlyAffinity
has url template: http://worm.mpi-cbg.de/affinity/structure.action

GlycO
type: NamedIndividual
type: Glycan Database
has abbreviation: GlycO
has url template: http://glycomics.ccrc.uga.edu/ontologywebapi/service/glycan/id/[
name: Glycomics Ontology

GlycoBase(Dublin)
type: NamedIndividual
type: Glycan Database
has abbreviation: GlycoBase(Dublin)

GlycoBase(Lille)
type: NamedIndividual
type: Glycan Database
has abbreviation: GlycoBase(Lille)
has url template: http://glycobase.univ-lille1.fr/base/view_mol.php

GlycoMapsDB
type: NamedIndividual
type: Glycan Database
has category: carbohydrate conformation
has abbreviation: GlycoMapsDB
has url template: http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php

GlycomeDB
type: NamedIndividual
type: Glycan Database
has abbreviation: GlycomeDB
has url template: http://www.glycome-db.org/database/showStructure.action

GlycoNAVI
type: NamedIndividual
type: Glycan Database
has category: chemical compound
has category: experimental
has category: synthesis
has abbreviation: GlycoNAVI
has url template: http://ws.glyconavi.org/DbDetail/moldetail.aspx

GlycoNMR
type: NamedIndividual
type: Glycan Database
has category: experimental
has abbreviation: GlycoNMR
has url template: http://glycoinfolab.jp/GlycoNMR/GeneralDetail

GLYCOSCIENCES.de
type: NamedIndividual
type: Glycan Database
has category: bibliography
has category: structure
has category: carbohydrate conformation
has category: experimental
has category: taxonomy
has abbreviation: GLYCOSCIENCES.de
has url template: http://www.glycosciences.de/sweetdb/start.php#struct%0A%20%20%09%09

JCGGDB
type: NamedIndividual
type: Glycan Database
has abbreviation: JCGGDB
has url template: http://jcggdb.jp/idb/jcggdb/[
name: Japan Consortium for Glycobiology and Glycotechnology DataBase

KEGG
type: NamedIndividual
type: Glycan Database
has abbreviation: KEGG
has url template: http://www.genome.jp/dbget-bin/www_bget
name: Kyoto Encyclopedia of Genes and Genomes

MonosaccharideDB
type: NamedIndividual
type: Glycan Database
has category: monosaccharide
has abbreviation: MonosaccharideDB
has url template: http://www.monosaccharidedb.org/display_monosaccharide.action

PDB
type: NamedIndividual
type: Glycan Database
has abbreviation: PDB
has url template: http://www.rcsb.org/pdb/explore/explore.do
name: RCSB Protein Data Bank

PFCSDB
type: NamedIndividual
type: Glycan Database
has category: bibliography
has category: structure
has category: experimental
has category: taxonomy
has abbreviation: PFCSDB
has url template: http://csdb.glycoscience.ru/plant_fungal/core/search_id.php
name: Plant and Fungal Carbohydrate Structure DataBase

PubChem
type: NamedIndividual
type: Glycan Database
has category: chemical compound
has abbreviation: PubChem
has url template: http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi

SMSA
type: NamedIndividual
type: Glycan Database
has category: chemical compound
has abbreviation: SMSA
has url template: http://ws.glyconavi.org/SM/id.php
name: Small Molecule for Spectral Analysis

UniCarb-DB
type: NamedIndividual
type: Glycan Database
has category: structure
has category: experimental
has abbreviation: UniCarb-DB
has url template: http://www.unicarb-db.org/structure/[

UniCarbKB
type: NamedIndividual
type: Glycan Database
has category: bibliography
has category: structure
has category: experimental
has category: glycoenyzme
has category: taxonomy
has category: tissue
has abbreviation: UniCarbKB
has url template: http://www.unicarbkb.org/structure/[

erythro
type: NamedIndividual
type: Relative Configuration

ce
type: NamedIndividual
type: Evidence Type

hplc
type: NamedIndividual
type: Evidence Type

lc
type: NamedIndividual
type: Evidence Type

lc ms
type: NamedIndividual
type: Evidence Type

lc msms
type: NamedIndividual
type: Evidence Type

ms
type: NamedIndividual
type: Evidence Type

msms
type: NamedIndividual
type: Evidence Type

nmr
type: NamedIndividual
type: Evidence Type

furanose
type: NamedIndividual
type: Ring Type
comment: A furanose is a five member ring structure containing four carbon atoms and one oxygen atom.

galacto
type: NamedIndividual
type: Relative Configuration

gluco
type: NamedIndividual
type: Relative Configuration

glutamic acid
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

glutamine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

glycero
type: NamedIndividual
type: Relative Configuration

glycine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

gulo
type: NamedIndividual
type: Relative Configuration

histidine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

ido
type: NamedIndividual
type: Relative Configuration

isoleucine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

leucine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

deoxy
type: NamedIndividual
type: Linkage Type
comment: The substituent is linked directly to the basetype backbone by replacing the OH group.

h at oh
type: NamedIndividual
type: Linkage Type
comment: A standard O-linked substituent, i.e. the substituent replaces the hydrogen of an OH group.

h loss
type: NamedIndividual
type: Linkage Type
comment: The substituent is linked directly to the basetype backbone by replacing the hydrogen atom.

r config
type: NamedIndividual
type: Linkage Type
comment: The substituent is linked directly to the basetype backbone by replacing a hydrogen atom at a terminal position, which would be non-chiral without the substituent, resulting in an R-configuration of the carbon.

s config
type: NamedIndividual
type: Linkage Type
comment: Same as R_CONFIG, but resulting in an S-Configuration of the carbon.

lysine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

lyxo
type: NamedIndividual
type: Relative Configuration

manno
type: NamedIndividual
type: Relative Configuration

methionine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

amber glycam
type: NamedIndividual
type: Monosaccharide Notation Scheme
comment: Two-letter residue names used within the AMBER GLYCAM forcefield. For more information, see Carbohydrate Naming Convention in Glycam. Note (1): Monosaccharide alias names in GLYCAM notation also encode linkage positions (in the first character of a three-letter-code residue name). These depend on the context of a residue within an oligosaccharide and thus are no monosaccharide properties. GLYCAM names stored in MonosaccharideDB refer to a terminal residue. The first character might have to be adjusted according to the specific context of a residue, i.e. in case other residues linked are to the given one. Note (2): The GLYCAM notation is not yet supported by the notation parsing routines, i.e. GLYCAM alias names can be created, but not be read yet.

bcsdb
type: NamedIndividual
type: Monosaccharide Notation Scheme
comment: The notation used by the Russian BCSDB. For more information on this notation, see the description on the BCSDB homepage.

carbbank
type: NamedIndividual
type: Monosaccharide Notation Scheme
comment: The CarbBank notation is based on the IUPAC extended notation. It is used by the Complex Carbohydrate Structure Database (CCSD), which is better known by the name of its query software "carbbank". CarbBank style notation forms the basis of several other notations, such as the Glycosciences.de scheme.

cfg
type: NamedIndividual
type: Monosaccharide Notation Scheme
comment: The LinearCode notation used by the US Consortium for Functional Glycomics (CFG).

glycoct
type: NamedIndividual
type: Monosaccharide Notation Scheme
comment: The nomenclature that is used by EUROCarbDB. For more information see www.eurocarbdb.org/recommendations/encoding/.

glycosciences de
type: NamedIndividual
type: Monosaccharide Notation Scheme
comment: The Notation used in the Glycosciences.de web portal. It is based on the CarbBank notation.

monosaccharidedb
type: NamedIndividual
type: Monosaccharide Notation Scheme
comment: MonosaccharideDB's internal notation format. Basetype and substituent names are the same as in GlycoCT, with the exception that 'anhydro' and 'lactone' modifications are included in the basetype here, while they are defined as substituents in GlycoCT. As most glycobiologist and also most carbohydrate databases consider a monosaccharide that contains substituents as one residue, they are defined in this way in MonosaccharideDB as well.

pdb
type: NamedIndividual
type: Monosaccharide Notation Scheme
comment: The 3-letter residue names as used by the Protein Data Bank (PDB). Unlike most of the other notations, these names cannot be generated automatically by conversion routines but have to be assigned manually by the database administrators. Some PDB residue names that encode carbohydrate residues define disaccharides or oligosaccharides. These are not implemented in MonosaccharideDB, as the scope of this database is on monosaccharide residues.

A
type: NamedIndividual
type: MS Fragment Type

B
type: NamedIndividual
type: MS Fragment Type

C
type: NamedIndividual
type: MS Fragment Type

X
type: NamedIndividual
type: MS Fragment Type

Y
type: NamedIndividual
type: MS Fragment Type

Z
type: NamedIndividual
type: MS Fragment Type

open
type: NamedIndividual
type: Ring Type
comment: Open chain sugar that does not form a ring.

phenylalanine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

proline
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

pyranose
type: NamedIndividual
type: Ring Type
comment: A Pyranose is any cyclic isomer that has a five carbons and one oxygen in a ring of six atoms.

reductive beta elimination
type: NamedIndividual
type: Chemical Release
comment: Beta elimination that is used reducing a get for stabilize glycan.

average
type: NamedIndividual
type: Repeat Attribute

exact
type: NamedIndividual
type: Repeat Attribute

max
type: NamedIndividual
type: Repeat Attribute

min
type: NamedIndividual
type: Repeat Attribute

unknown
type: NamedIndividual
type: Repeat Attribute

ribo
type: NamedIndividual
type: Relative Configuration

unknown
type: NamedIndividual
type: Ring Type
comment: A monosaccharide whose ring type is unknown.

selenocysteine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

serine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

acetyl
type: NamedIndividual
type: Substituent Type
comment: COCH3

amino
type: NamedIndividual
type: Substituent Type
comment: NH2

bromo
type: NamedIndividual
type: Substituent Type
comment: Br

chloro
type: NamedIndividual
type: Substituent Type
comment: Cl

ethanolamine
type: NamedIndividual
type: Substituent Type
comment: NHCH2CH2OH

ethyl
type: NamedIndividual
type: Substituent Type
comment: CH2CH3

fluoro
type: NamedIndividual
type: Substituent Type
comment: F

formyl
type: NamedIndividual
type: Substituent Type
comment: CHO

glycolyl
type: NamedIndividual
type: Substituent Type
comment: COCH2OH

hydroxymethyl
type: NamedIndividual
type: Substituent Type
comment: CH2OH

imino
type: NamedIndividual
type: Substituent Type
comment: NH

iodo
type: NamedIndividual
type: Substituent Type
comment: I

methyl
type: NamedIndividual
type: Substituent Type
comment: CH3

n acetyl
type: NamedIndividual
type: Substituent Type
comment: NHCOCH3

n alanine
type: NamedIndividual
type: Substituent Type
comment: NHCOCHNH2CH3

n dimethyl
type: NamedIndividual
type: Substituent Type
comment: N(CH3)2

n ethyl
type: NamedIndividual
type: Substituent Type
comment: NHCH2CH3

n formyl
type: NamedIndividual
type: Substituent Type
comment: NHCHO

n glycolyl
type: NamedIndividual
type: Substituent Type
comment: NCOCH2OH

n methyl
type: NamedIndividual
type: Substituent Type
comment: NHCH3

n succinate
type: NamedIndividual
type: Substituent Type
comment: NCOCH2CH2COOH

n sulfate
type: NamedIndividual
type: Substituent Type
comment: NHSO3H

n trifluoroacetyl
type: NamedIndividual
type: Substituent Type
comment: NHCOCF3

n trimethyl
type: NamedIndividual
type: Substituent Type
comment: N(CH3)3

nitrat
type: NamedIndividual
type: Substituent Type
comment: NO2

phosphate
type: NamedIndividual
type: Substituent Type
comment: PO3H2

r lactate
type: NamedIndividual
type: Substituent Type
comment: CH3CHCOOH

r pyruvate
type: NamedIndividual
type: Substituent Type
comment: CH2CCOOH

s lactate
type: NamedIndividual
type: Substituent Type
comment: CH3CHCOOH

s methyl
type: NamedIndividual
type: Substituent Type
comment: SCH3

s pyruvate
type: NamedIndividual
type: Substituent Type
comment: CH2CCOOH

seleno
type: NamedIndividual
type: Substituent Type
comment: SeH

sulfate
type: NamedIndividual
type: Substituent Type
comment: SO3H

telluro
type: NamedIndividual
type: Substituent Type
comment: TeH

thio
type: NamedIndividual
type: Substituent Type
comment: SH

trifluoroacetyl
type: NamedIndividual
type: Substituent Type
comment: COCF3

x lactate
type: NamedIndividual
type: Substituent Type
comment: CH3CHCOOH

x pyruvate
type: NamedIndividual
type: Substituent Type
comment: CH2CCOOH

cfg
type: NamedIndividual
type: Symbol Format
comment: A symbol is Consortium for Functional Glycomics (CFG) notation.

cfg bw
type: NamedIndividual
type: Symbol Format
comment: CFG symbol that is displaied black and white notation.

text
type: NamedIndividual
type: Symbol Format
comment: A glycan structure is displayed by text-only form.

uoxf
type: NamedIndividual
type: Symbol Format
comment: A symbol is Oxford (UOXF) notations.

uoxf bw
type: NamedIndividual
type: Symbol Format
comment: UOXF symbol that is displayed black and white notation.

chemical
type: NamedIndividual
type: Synthetic Type
comment: Chemical synthesis that various protecting group manipulations used in the context of glycan synthesis.

chemoenzymatic
type: NamedIndividual
type: Synthetic Type
comment: Relying on a hybrid of chemical and enzymatic steps that typically begins with chemical synthesis and ends with enzymatic extension.

enzymatic
type: NamedIndividual
type: Synthetic Type
comment: Employing glycosyltransferases and glycosidases in a synthetic schema.

talo
type: NamedIndividual
type: Relative Configuration

threo
type: NamedIndividual
type: Relative Configuration

threonine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

9-aminopyrene-1,3,6-trifulfonic acid
type: NamedIndividual
type: Label
comment: Glycan labelled with 9-aminopyrene-1,3,6-trifulfonic acid

8-aminonaphthalene-1,3,6-trisulfonic acid
type: NamedIndividual
type: Label
comment: Glycan labelled with 8-aminonaphthalene-1,3,6-trisulfonic acid

tryptophan
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

tyrosine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

valine
type: NamedIndividual
type: Amino Acid
has absolute configuration: laevus

xylo
type: NamedIndividual
type: Relative Configuration