Ontology Documentation generated by WIDOCO
language en
Latest version:
http://purl.jp/bio/12/glyco/glycan
Revision:
1.2.1
Authors:
Daisuke Shinmachi
Hiro Sawaki
Issaku Yamada
Kiyoko Aoki-Kinoshita
Masaaki Matsubara
Matthew Campbell
Philip Toukach
Rene Ranzinger
Shin Kawano
Shujiro Okuda
Download serialization:
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License:
http://insertlicenseURIhere.example.org
Visualization:
Visualize with WebVowl
Cite as:
Daisuke Shinmachi, Hiro Sawaki, Issaku Yamada, Kiyoko Aoki-Kinoshita, Masaaki Matsubara, Matthew Campbell, Philip Toukach, Rene Ranzinger, Shin Kawano, Shujiro Okuda. Revision: 1.2.1.
Provenance of this page
Ontology Specification Draft

Abstract

This is a placeholder text for the abstract. The abstract should contain a couple of sentences summarizing the ontology and its purpose.

Introduction back to ToC

This is a place holder text for the introduction. The introduction should briefly describe the ontology, its motivation, state of the art and goals.

Namespace declarations

Table 1: Namespaces used in the document
[Ontology NS Prefix]<http://purl.jp/bio/12/glyco/glycan>
bibo<http://purl.org/ontology/bibo/>
dc<http://purl.org/dc/elements/1.1/>
dcterms<http://purl.org/dc/terms/>
foaf<http://xmlns.com/foaf/0.1/>
glycan<http://purl.jp/bio/12/glyco/glycan#>
owl<http://www.w3.org/2002/07/owl#>
psi<http://purl.obolibrary.org/obo/>
rdf<http://www.w3.org/1999/02/22-rdf-syntax-ns#>
rdfs<http://www.w3.org/2000/01/rdf-schema#>
uniprot<http://www.uniprot.org/core/>
xml<http://www.w3.org/XML/1998/namespace>
xsd<http://www.w3.org/2001/XMLSchema#>

[Ontology Name]: Overview back to ToC

This ontology has the following classes and properties.

Classes

Object Properties

Data Properties

Annotation Properties

Named Individuals

[Ontology Name]: Description back to ToC

This is a placeholder text for the description of your ontology. The description should include an explanation and a diagram explaining how the classes are related, examples of usage, etc.

Cross-reference for [Ontology Name] classes, object properties and data properties back to ToC

This section provides details for each class and property defined by [Ontology Name].

Classes

Absolute Configurationc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#absolute_configuration

Absolute configuration of a monosaccharide basetype. Possible values are D, L or Unknown.
has super-classes
Monosaccharide Property c
is in range of
has absolute configuration op
has members
dexter ni, laevus ni, unknown ni

Adductc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#adduct

has super-classes
MS Property c
is in domain of
has count dp, has ion op
is in range of
has adduct op

Adduct Ionc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#adduct_ion

has super-classes
MS Property c
is in range of
has ion op
has members
H+ ni, Na+ ni

Aglyconc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#aglycon

Instances of this class represent the aglyca which are covalently attached to the glycans. It contains information about the aglycon, the linkage position in aglycon and glycan.
has super-classes
Compound c
has sub-classes
Lipid c, Peptide c, Protein c, Protein c
is in range of
has aglycon op

Amino Acidc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#amino_acid

has super-classes
Compound c
is in range of
has amino acid type op
has members
Alanine ni, D-Alanine ni, arginine ni, asparagine ni, aspartic acid ni, cysteine ni, d-arginine ni, d-asparagine ni, d-aspartic acid ni, d-cysteine ni, d-glutamic acid ni, d-glutamine ni, d-glycine ni, d-histidine ni, d-isoleucine ni, d-leucine ni, d-lysine ni, d-methionine ni, d-phenylalanine ni, d-proline ni, d-selenocysteine ni, d-serine ni, d-threonine ni, d-tryptophan ni, d-tyrosine ni, d-valine ni, glutamic acid ni, glutamine ni, glycine ni, histidine ni, isoleucine ni, leucine ni, lysine ni, methionine ni, phenylalanine ni, proline ni, selenocysteine ni, serine ni, threonine ni, tryptophan ni, tyrosine ni, valine ni

Anomerc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#anomer

Anomer of a monosaccharide. Possible values are alpha, beta, unknown or none.
has super-classes
Monosaccharide Property c
is in range of
has anomer op
has members
alpha ni, beta ni, none ni, unknown ni

Antibodyc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#antibody

A subclass of glycan_binder which binds to an epitope; in this namespace, this is a glycoepitope, which may be a (part of a) glycan or a part of a glycoconjugate.
has super-classes
Glycan Binder c

Archetypec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Archetype

has super-classes
Saccharide c
is in domain of
is archetype of op
is in range of
has archetype op

Basetypec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#basetype

Basetype of the monosaccharide in accordance to GlycoCT and MonosaccharideDB definitions.
has super-classes
Monosaccharide Property c
is in domain of
configuration op, has anomer op, has basetype id dp, has core modification op, has extended stereocode dp, has first configuration op, has ring end dp, has ring start dp, has ring type op, has second configuration op, has size dp, has stereocode dp, has third configuration op
is in range of
has basetype op

Biological Repeat Unitc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#biological_repeat_unit

A biological repeat unit contains the monosaccharides of the repetitive oligosaccharide unit in the arrangement as they are synthesized.
has super-classes
Motif c

Bufferc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#buffer

A buffer is an aqueous solution consisting of a mixture of a weak acid and its conjugate base or a weak base and its conjugate acid.
has super-classes
Role c
is in range of
used buffer op

Carbohydrate Formatc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#CarbohydrateFormat

Instances of this class are the carbohydrate sequence formats.
has sub-classes
Glycam c, Glyco C T c, Iupac Condensed c, Iupac Extended c, Linear Code c, Wurcs c
is in range of
in carbohydrate format op
has members
carbbank ni, csdb ni, glycoct ni, glyde2 ni, iupac condensed ni, iupac extended ni, iupac short ni, kcf ni, linearcode ni, linucs ni, uoxf ni, wurcs ni

CE Digest Electrogramc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#CE_Digest_Electrogram

has super-classes
CE Property c
is in domain of
has ce peak op, has exoglycosidase electrogram op

CE Electrogramc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#CE_Electrogram

has super-classes
CE Property c
is in domain of
has ce peak op
is in range of
has ce electrogram op

CE Propertyc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#CE_Property

Class that contains Capillary Electrophoresis properties.
has super-classes
CE Property c
has sub-classes
CE Digest Electrogram c, CE Electrogram c, CE Property c
is in range of
has ce peak op

Chemical Releasec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#chemical_release

Release of glycan that is used chemical reaction.
has super-classes
Glycan Release c
has members
beta elimination ni, hydrazine release ni, reductive beta elimination ni

Chemical Repeat Unitc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#chemical_repeat_unit

A chemical repeat unit is generated when a polysaccharide is chopped down for the analysis. The sequence of the oligomer is based on the reaction chopping down the glycan and may not represent the biological repeat unit.
has super-classes
Motif c

Citationc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Citation

Initial class name is capitalized. "glycan:Citation"
is equivalent to
Citation c

Citationc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#citation

References are publications related to the glycan structures or features. This can be journal papers, book chapters, conference articles and so on.
is in domain of
author List dp, has keyword dp, has method dp, has pmid dp, has reference op, issued dp, page End dp, page Start dp, publisher dp, short Title dp, title dp, volume dp
is in range of
published in op

Componentc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#component

Components are used to specify the composition of glycans. A component has a reference to the molecule (monosaccharide, substituent) and a number of occurrences for this molecule in the glycan.
has super-classes
Thing c
is in domain of
has cardinality dp, has cardinality per repeat dp, has monosaccharide op
is in range of
has component op

Compoundc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#compound

Superclass of types of glycan related molecules and fragments.
has sub-classes
Aglycon c, Amino Acid c, Glycoconjugate c, Saccharide c
is in domain of
has reference op, has resource entry op
is in range of
has lc annotation op, has_compound op, used molecule op, used reference standard op

Configurationc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#configuration

Configuration of a monosaccharide. Each monosaccharide can have several configurations (e.g. dgro-dgal). Each configuration consist of a absolute configuration and a relative configuration.
has super-classes
Monosaccharide Property c
is in domain of
has absolute configuration op, has relative configuration op
is in range of
configuration op, has first configuration op, has second configuration op, has third configuration op
has members
x ni

Core Modificationc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification

Core modification of a monosaccharide. A core modification consists of a modification type and the position(s) at which this modification happened.
has super-classes
Monosaccharide Property c
is in domain of
has modification position dp, has modification position2 dp, has_core_modification_type op
is in range of
has core modification op

Core Modification Typec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification_type

List of core modifications that can appear on a monosaccharide.
has super-classes
Monosaccharide Property c
is in range of
has_core_modification_type op
has members
acid ni, aldi ni, anhydro ni, deoxy ni, en ni, enx ni, geminal ni, keto ni, sp ni, sp2 ni, yn ni

Cyclic Glycanc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#cyclic_glycan

Cyclic glycans are a special form of glycans which are rarely found in nature. As implied by the name, they form cyclic structures, in contrast to the branched tree structures of commonly known glycans.
has super-classes
Saccharide c

Enzymatic Releasec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#enzymatic_release

Release of glycan by an enzymatic reaction.
has super-classes
Glycan Release c
has members
PNGaseA release ni, PNGaseF release ni

Enzymec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#enzyme

Enzyme that take part in synthesis anddegradation of glycan.
has super-classes
Role c
is in range of
has enzyme op

Evidencec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence

An evidence is any kind of experimental data that can be linked to glycans. These are mainly experiments that elucidate the carbohydrate structure or feature but can also include experiments for creating carbohydrates for example by synthesis.
has sub-classes
Evidence Binding c, Evidence CE c, Evidence H P A E C c, Evidence LC c, Evidence MS c, Evidence NMR c
is in domain of
has manufacturer dp, has model dp, has reference op, is from profile op, published in op
is in range of
has evidence op

Evidence Bindingc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_binding

Entities of this class represent molecular interactions between instances of glycan:saccharide and glycan:glycan_binder, elucidated by experimental results.
has super-classes
Evidence c
has sub-classes
Evidence Binding Antibody c, Evidence Binding Lectin c
is in domain of
captured by op, has affinity value dp

Evidence Binding Antibodyc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_binding_antibody

Entities of this class represent molecular interactions between instances of epitope and antibody, elucidated by experimental results.
has super-classes
Evidence Binding c

Evidence Binding Lectinc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_binding_lectin

Entities of this class represent molecular interactions between instances of glycan and lectin, elucidated by experimental results.
has super-classes
Evidence Binding c

Evidence CEc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_ce

Experiments using capillary electrophoresis to identify and characterize carbohydrate structures.
has super-classes
Evidence c
is in domain of
has arabinose unit dp, has ce electrogram op, has glucose unit dp

Evidence G Cc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Evidence_GC

has super-classes
Evidence MS c

Evidence H P A E Cc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Evidence_HPAEC

has super-classes
Evidence c

Evidence HPLCc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Evidence_HPLC

Normal Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites run on a HPLC instrument. Retention times are compared to a dextran ladder and represented as GU values.
has super-classes
Evidence LC c

Evidence IGOTc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_IGOT

Is an IGOT experiment, subclass of glycan:evidence_lc_ms. IGOT experiment is a procedure for the large-scale identification of N-glycosylated proteins, with isotope-coded glycosylation-site-specific tagging. (PMID: 12754521)
has super-classes
Evidence LC MS c
is in domain of
has peptide op

Evidence LCc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_lc

Experiments using LC techniques to identify and characterize carbohydrates or used for separating glycans by charge or other retention properties.
has super-classes
Evidence c
has sub-classes
Evidence HPLC c, Evidence RPLC c, Evidence UPLC c
is in domain of
has arabinose unit dp, has glucose unit dp, has lc chromatogram op, has_phase_description dp, injection volume dp, used column temperature dp, used lc flow rate dp, used lc gradient op, used molecule op

Evidence LC MSc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_lc_ms

has super-classes
Evidence MS c
has sub-classes
Evidence IGOT c
is in domain of
has lc chromatogram op, injection volume dp, used column op, used column temperature dp, used lc flow rate dp, used lc gradient op, used molecule op

Evidence MSc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_ms

Experiments using mass spectrometry to identify the carbohydrate structures.
has super-classes
Evidence c
has sub-classes
Evidence G C c, Evidence LC MS c
is in domain of
has mass spectrum op, has precursor peak op, used ms op

Evidence NMRc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_nmr

Experiments using NMR to identify the carbohydrate structure.
has super-classes
Evidence c
is in domain of
has missing signals max dp, has missing signals min dp, has nucleus dp, has subspectrum op, has unassigned signal op, used amount mg dp, used buffer op, used concentration dp, used frequency dp, used ph dp, used reference standard op, used solvent part op, used temperature dp

Evidence RPLCc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Evidence_RPUPLC

Reverse Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites. Retention times are normally compared with an arabinose ladder and assigned arabinose units (AU).
has super-classes
Evidence LC c

Evidence Typec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_type

List of evidence types.
has super-classes
Thing c
has members
ce ni, hplc ni, lc ni, lc ms ni, lc msms ni, monosaccharide analysis ni, ms ni, msms ni, nmr ni, uplc ni

Evidence UPLCc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Evidence_UPLC

Normal Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites run on a UPLC instrument. Retention times are compared to a dextran ladder and represented as GU values.
has super-classes
Evidence LC c

Glycamc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Glycam

This class depicts a GlyCAM format of glycans
has super-classes
Carbohydrate Format c
is disjoint with
Glyco C T c, Iupac Condensed c, Iupac Extended c, Linear Code c, Wurcs c

Glycan Binderc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycan_binder

A class of compound that has affinity to a glycan or glycoconjugate. Usually a reference to a lectin, virus, bacteria, etc.
has super-classes
Role c
has sub-classes
Antibody c, Lectin c
is in range of
captured by op, has affinity to op

Glycan Databasec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycan_database

A class representing databases that store glycans and related information. If possible, owl:sameAs should be used referencing the biosharing entry for this database.
has super-classes
Thing c
is in domain of
has abbreviation dp, has category op, has url template dp
is in range of
in glycan database op
has members
BCSDB ni, CAZy ni, CFG ni, CarbBank ni, Carint ni, CfgGBP ni, CfgGlycoenzyme ni, ChEBI ni, ChemSpider ni, GLYCOSCIENCES.de ni, GlyAffinity ni, GlycO ni, Glyco Store ni, GlycoBase(Dublin) ni, GlycoBase(Lille) ni, GlycoMapsDB ni, GlycoNAVI ni, GlycoNMR ni, GlycomeDB ni, JCGGDB ni, KEGG ni, MonosaccharideDB ni, PDB ni, PFCSDB ni, PubChem ni, SMSA ni, UniCarb-DB ni, UniCarbKB ni

Glycan Database Categoryc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycan_database_category

Instances of this class are the categories for the classification of glycan databases.
has super-classes
Thing c
is in range of
has category op
has members
bibliography ni, carbohydrate conformation ni, carbohydrate interaction ni, chemical compound ni, experimental ni, glycan binding protein ni, glycoenyzme ni, monosaccharide ni, structure ni, synthesis ni, taxonomy ni, tissue ni

Glycan Epitopec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycan_epitope

A glycan epitope is a special motif which has a known biological function.
has super-classes
Glycan Motif c
is in range of
has epitope op

Glycan Motifc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycan_motif

A glycan motif is a sub-structure of glycans that has been named because of its frequent appearance or because of the biological meaning.
has super-classes
Motif c
has sub-classes
Glycan Epitope c
is in domain of
contained in op
is in range of
has motif op

Glycan Releasec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycan_release

A class for process of glycan release, including chemical and enzymatic reaction.
has super-classes
Sample Preparation c
has sub-classes
Chemical Release c, Enzymatic Release c

Glyco C Tc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#GlycoCT

This class depicts a GlycoCT format of glycans
has super-classes
Carbohydrate Format c
is disjoint with
Glycam c, Iupac Condensed c, Iupac Extended c, Linear Code c, Wurcs c

Glycoconjugatec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycoconjugate

Superclass of biomolecules consisting of a glycan part and an aglycon part, that are covalently attached to each other.
has super-classes
Compound c
has sub-classes
Glycolipid c, Glycopeptide c, Glycoprotein c, Glycoprotein c, Glycoside c, Glycosylated Amino Acid c
is in domain of
has aglycon op, has attached glycan op, is glycosylated on op

Glycoconjugate Sequencec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycoconjugate_sequence

Sequence of the glycoconjugate that includes the carbohydrate and the aglyca. Predicates should be selected based on the format used to represent the structure.
has super-classes
Sequence c
is in range of
has glycoconjugate sequence op

Glycolipidc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycolipid

Lipid with saccharide(s) attached by glycosidic bond(s).
has super-classes
Glycoconjugate c

Glycopeptidec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycopeptide

A class involves artificial degradation products of glycoproteins with protease digestion, which typically results from a proteomics experiment. There are reasons or traces that at least one amino acid residue of the peptide is glycosylated.
has super-classes
Glycoconjugate c
is in domain of
has A A sequence dp, has glycosylated A A op, has uniprot accession op
is in range of
has peptide op

Glycoproteinc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Glycoprotein

is equivalent to
Glycoprotein c
has super-classes
Glycoconjugate c

Glycoproteinc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycoprotein

A compound that consists of protein and glycan parts; they are covalently attached to each other by a glycosidic bond. There are reasons or traces that at least one amino acid residue of the protein is glycosylated.
has super-classes
Glycoconjugate c
is in domain of
has A A sequence dp, has glycosylated A A op, has uniprot accession op

Glycosequencec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycosequence

Sequence of the glycan in a specified sequence format.
has super-classes
Sequence c
is in range of
has glycosequence op

Glycosidec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycoside

has super-classes
Glycoconjugate c

Glycosyl Hydrolase Reactionc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycosyl_hydrolase_reaction

Instances of this class are glycosyl hydrolase reactions which releases monosaccharide or oligosaccharides from the glycan or glycoconjugate.
has super-classes
Reaction c
is in range of
degraded by op

Glycosylated Amino Acidc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycosylated_AA

An amino acid residue, in a glycoprotein or glycopeptide sequence, that a glycan is covalently attached. To specify glycosylation type or bond of glycoprotein.
has super-classes
Glycoconjugate c
is in domain of
has amino acid type op, modification type op
is in range of
has glycosylated A A op

Glycosylation Annotationc back to ToC or Class ToC

IRI: http://www.uniprot.org/core/Glycosylation_Annotation

Uniprot term for Glycosylation type (e.g. N-glycosylation)
has sub-classes
Glycosylation Site c
is in range of
modification type op

Glycosylation Sitec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Glycosylation_site

A glycosylation site is an amino acid residue within a peptide that accepts oligosaccharide via amide linkage.
has super-classes
Glycosylation Annotation c
is in range of
glycosylates op, is glycosylated on op

Glycosyltransferase Reactionc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycosyltransferase_reaction

Instances of this class are glycosyltransferase reactions that build up glycans or glycoconjugates by attaching additional monosaccharides or oligosaccharides to them.
has super-classes
Reaction c
is in range of
synthesized by op

Gradientc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#gradient

has super-classes
LC Property c
is in domain of
used lc run time dp, used percent max dp, used percent min dp
is in range of
used lc gradient op

Imagec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#image

Image class for representing glycan images.
has super-classes
Image c
is in domain of
has symbol format op
is in range of
has image op

Imagec back to ToC or Class ToC

IRI: http://xmlns.com/foaf/0.1/Image

Image class.
has sub-classes
Image c

Instrument Modelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000031

PSI: Instrument model name not including the vendor&#39;s name.
is in range of
has ms model op

Ionization Typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000008

PSI: The method by which gas phase ions are generated from the sample.
is in range of
has ionisation type op

Iupac Condensedc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#IupacCondensed

This class depicts a IUPAC condensed format of glycans
has super-classes
Carbohydrate Format c
is disjoint with
Glycam c, Glyco C T c, Iupac Extended c, Linear Code c, Wurcs c

Iupac Extendedc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#IupacExtended

This class depicts a IUPAC Extended format of glycans.
has super-classes
Carbohydrate Format c
is disjoint with
Glycam c, Glyco C T c, Iupac Condensed c, Linear Code c, Wurcs c

Labelc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Label

has super-classes
Sample Preparation c
has members
2-aminoacridone ni, 2-aminobenzamide ni, 2-aminobenzoic acid ni, 2-aminopyridine ni, 8-aminonaphthalene-1,3,6-trisulfonic acid ni, 9-aminopyrene-1,3,6-trifulfonic acid ni

LC Chromatogramc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#lc_chromatogram

has super-classes
LC Property c
is in domain of
has exoglycosidase chromatogram op, has lc chromatogram peak op
is in range of
has lc chromatogram op

LC Columnc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#lc_column

has super-classes
LC Property c
is in domain of
has diameter dp, has length dp, has material dp, has particle size dp, has_phase_description dp
is in range of
used column op

LC Digest Chromatogramc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#lc_digest_chromatogram

has super-classes
LC Property c
is in domain of
has enzyme op, has exoglycosidase treatment op
is in range of
has exoglycosidase chromatogram op

LC Peakc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#lc_peak

has super-classes
LC Property c
is in domain of
has arabinose unit dp, has glucose unit dp, has lc annotation op, has peak area dp, has retention time dp
is in range of
has lc chromatogram peak op

LC Propertyc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#lc_property

Class that contains Liquid Chromatography properties such as gradient, Lc column.
has sub-classes
Gradient c, LC Chromatogram c, LC Column c, LC Digest Chromatogram c, LC Peak c

Lectinc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#lectin

A class of protein that binds to glycans but is neither an antibody nor an enzyme.
has super-classes
Glycan Binder c

Linear Codec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#LinearCode

This class depicts a Linear Code format of glycans
has super-classes
Carbohydrate Format c
is disjoint with
Glycam c, Glyco C T c, Iupac Condensed c, Iupac Extended c, Wurcs c

Linkage Typec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#linkage_type

List of linkage types that can occur on the monosaccharide side of monosaccharide to substituent linkages.
has super-classes
Monosaccharide Property c
is in range of
has default linkage type op, has default linkage type2 op, has linkage type op
has members
deoxy ni, h at oh ni, h loss ni, r config ni, s config ni

Lipidc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#lipid

has super-classes
Aglycon c

Mass Analyzer Typec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/MS_1000443

PSI: Mass analyzer separates the ions according to their mass-to-charge ratio.
is in range of
has mass analyzer op

Mass Spectrometry Devicec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#mass_spectrometry_device

has super-classes
MS Property c
is in domain of
has ionisation type op, has mass analyzer op, has ms model op
is in range of
used ms op

Mass Spectrumc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#mass_spectrum

has super-classes
MS Property c
has sub-classes
Msn Spectrum c, Profile Spectrum c
is in domain of
has fragmented spectrum op, has mass spectrometry peak op, has ms level dp
is in range of
has mass spectrum op

Monosaccharidec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide

Instances of this class represent monosaccharides and their information. These monosaccharides are used to specify the composition of glycans, referenced by glycan:component. Sample URI: http://www.monosaccharidedb.org/rdf/monosaccharide.action?name=o-dall-HEX-0:0
has super-classes
Saccharide c
is in domain of
has alias op, has average molecular weight dp, has basetype op, has linkage position dp, has monoisotopic molecular weight dp, has msdb id dp, has substitution op
is in range of
has monosaccharide op, has residue op

Monosaccharide Aliasc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide_alias

Alternative names for the monosaccharide in different databases or resources. The aliases consist of the name and the monosaccharide notation scheme.
has super-classes
Monosaccharide Property c
is in domain of
has alias name dp, has external substituent op, has monosaccharide notation scheme op, is primary name dp, is trivial name dp
is in range of
has alias op

Monosaccharide Notation Schemec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme

List of monosaccharide notation scheme. One monosaccharide can have several different names depending on the notation scheme.
has super-classes
Monosaccharide Property c
is in range of
has monosaccharide notation scheme op
has members
amber glycam ni, bcsdb ni, carbbank ni, cfg ni, glycoct ni, glycosciences de ni, monosaccharidedb ni, pdb ni

Monosaccharide Propertyc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide_property

Class that contains all monosaccharides properties such as anomer, basetype etc.
has sub-classes
Absolute Configuration c, Anomer c, Basetype c, Configuration c, Core Modification c, Core Modification Type c, Linkage Type c, Monosaccharide Alias c, Monosaccharide Notation Scheme c, Relative Configuration c, Ring Type c, Substituent c, Substituent Linkage c, Substituent Type c

Motifc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#motif

has sub-classes
Biological Repeat Unit c, Chemical Repeat Unit c, Glycan Motif c
is in domain of
has glycoconjugate sequence op, has glycosequence op

MS Annotationc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ms_annotation

has super-classes
MS Property c
is in domain of
has adduct op, has fragment dp, has fragment type op, has neutral loss op
is in range of
has ms annotation op

MS Fragment Typec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ms_fragment_type

has super-classes
MS Property c
is in range of
has fragment type op
has members
A ni, B ni, C ni, X ni, Y ni, Z ni

MS Peakc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ms_peak

Instances represent a peak in a mass spectrometry data consisting of an m/z value, intensity value and optional a charge state.
has super-classes
MS Property c
is in domain of
has charge dp, has intensity dp, has ms annotation op, has mz dp
is in range of
has mass spectrometry peak op, has precursor peak op

MS Propertyc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ms_property

Class that contains Mass Spectrometry properties such as adduct, adduct ion etc.
has sub-classes
Adduct c, Adduct Ion c, MS Annotation c, MS Fragment Type c, MS Peak c, Mass Spectrometry Device c, Mass Spectrum c, Neutral Loss c

Msn Spectrumc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#msn_spectrum

has super-classes
Mass Spectrum c
is in domain of
has retention time dp
is in range of
has fragmented spectrum op

N-glycanc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#N-glycan

A subclass of saccharide primarily found on eukaryotic glycoproteins. This class of glycan typically contains a specific glycan substructure motif (http://jcggdb.jp/idb/motif?id=JCGG-MOTIF1001), and the reducing terminal GlcNAc of the glycan is attached to the N-atom of an asparagine residue of the protein in a beta configuration. A class of glycoconjugate including dolichyl-diphospho esters also involves the same glycan motif, but they are attached in an alpha configuration. The dolichyl-diphosphooligosaccharides are precursors or intermediates in the protein N-glycosylation process, by which the specific dolichyl-diphosphooligosaccharide (http://jcggdb.jp/idb/jcggdb/JCGG-STR015745) is transferred from the dolichyl phospohate ester to an asparagine residue of the protein by an oligosacchayl transferase (GO:0004579).
has super-classes
Saccharide c

Neutral Lossc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#neutral_loss

has super-classes
MS Property c
is in domain of
has chemical formula dp, has count dp
is in range of
has neutral loss op

NMR Propertyc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#nmr_property

Parentclass for all classes used in NMR evidences.
has sub-classes
Signal c, Subspectrum c

O-glycanc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#O-glycan

A subclass of saccharide primarily found in glycoproteins This class is subdivided into a variety of subclasses due to its expression in a variety of biological sources. In terms of structure, O-glycans either consist of a GalNAc, Man, Fuc, Glc residue at the reducing end attached to a serine, threonine, hydroxylysine or hydroxyproline residue in a protein sequence in an alpha configuration.
has super-classes
Saccharide c

Peptidec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#peptide

Part of a protein amino acid sequence generated by digestion for analysis.
has super-classes
Aglycon c
is in domain of
has A A sequence dp

Polymerization Degreec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#polymerization_degree

A repeat is a property of a polysaccharide that specifies how often the oligomer part is repeated to form the polysaccharide.
has super-classes
Thing c
is in domain of
has repeat attribute op, has repeat count dp
is in range of
has polymerization degree op

Polysaccharidec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#polysaccharide

Polysaccharides are a special form of glycans that consist of large repetitive oligosaccharide units. Often the exact number of repetitions cannot be specified because the experimental technique does not allow this or because the number of repetition in nature varies.
has super-classes
Saccharide c
is in domain of
has polymerization degree op

Profile Spectrumc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#profile_spectrum

has super-classes
Mass Spectrum c

Proteinc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#protein

Proteinous part of a glycoprotein that is equivalent to the nascent peptide or protein entities found in UniProt or other protein databases.
is equivalent to
Protein c
has super-classes
Aglycon c
is in domain of
has A A sequence dp, has uniprot accession op

Proteinc back to ToC or Class ToC

IRI: http://www.uniprot.org/core/Protein

Uniprot protein class.
has super-classes
Aglycon c
is in domain of
has protein name op
is in range of
has uniprot accession op

Reactionc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#reaction

Class for reaction process to create or degrade glycans or glycoconjugates.
has sub-classes
Glycosyl Hydrolase Reaction c, Glycosyltransferase Reaction c, Sulfotransferase Reaction c
is in domain of
has enzyme op, has product op, has substrate op, used buffer op
is in range of
catalyzed by op, has exoglycosidase treatment op

Referenced Compoundc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Referenced_compound

Initial class name is capitalized. "glycan:Referenced_compound"
is equivalent to
Referenced Compound c
is in domain of
has association op, has_compound op

Referenced Compoundc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#referenced_compound

Previously correlation instances, which connects a compound class and other information (source, references, evidence) that belong to one data set. That allows to specify that a compound instance, which has been found in a certain source was published by a certain publication.
is in domain of
elucidated dp, from_sample op, has alternative name op, has evidence op, has exoglycosidase electrogram op, has glycan op, has resource entry op, has structure location dp, is from profile op, is from report op, is from source op, published in op
is in range of
has exoglycosidase electrogram op, has reference op, is from profile op, is from report op

Relative Configurationc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#relative_configuration

List of relative monosaccharide configurations according to IUPAC.
has super-classes
Monosaccharide Property c
is in range of
has relative configuration op
has members
allo ni, altro ni, arabino ni, erythro ni, galacto ni, gluco ni, glycero ni, gulo ni, ido ni, lyxo ni, manno ni, ribo ni, talo ni, threo ni, xylo ni

Repeat Attributec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#repeat_attribute

List of possible attributes to specify the repeat count. Possible values are average, exact, minimum, maximum or unknown.
is in range of
has repeat attribute op
has members
average ni, exact ni, max ni, min ni, unknown ni

Resource Entryc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#resource_entry

A resource entry describes an entry about the glycan in another database.
has super-classes
Thing c
is in domain of
in glycan database op
is in range of
has resource entry op

Ring Typec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ring_type

Ringtype of a basetype.
has super-classes
Monosaccharide Property c
is in range of
has ring type op
has members
furanose ni, open ni, pyranose ni, unknown ni

Rolec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#role

Classification hierarchy for molecular functions.
has sub-classes
Buffer c, Enzyme c, Glycan Binder c, Solvent c

Saccharidec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Saccharide

Instances of this class represent the molecule information of the glycans. That includes chemical composition, molecular weight but also related information such as images of the glycans.
has super-classes
Compound c
has sub-classes
Archetype c, Cyclic Glycan c, Monosaccharide c, N-glycan c, O-glycan c, Polysaccharide c
is in domain of
glycosylates op, has archetype op
is in range of
is archetype of op

Sample Preparationc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#sample_preparation

A process which is the syntesis or preparation of sample for glycan analysis.
has sub-classes
Glycan Release c, Glycosidase Treatment c, Label c

Sequencec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#sequence

A sequence is the textual description of a molecule. For example FASTA sequences for proteins / peptides.
has super-classes
Thing c
has sub-classes
Glycoconjugate Sequence c, Glycosequence c
is in domain of
has sequence dp, in carbohydrate format op

Signalc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#signal

A signal is a NMR data point.
has super-classes
NMR Property c
is in domain of
has chemical shift dp, has chemical shift max dp, has chemical shift min dp, has coupling constant dp, has multiplicity dp, is missing dp, of carbon number dp
is in range of
has signal op, has unassigned signal op

Softwarec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#software

Software that has been utilized for the glycan. For example software used to model the glycan.
is in domain of
has version dp
is in range of
used software op

Solventc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#solvent

A solvent is a substance that dissolves a solute (a chemically different liquid, solid or gas), resulting in a solution.
has super-classes
Role c
is in range of
used solvent op
has members
C D Cl3 ni, C D3 O D ni, C5 D5 N ni, D2O ni, DMSO ni, H2 O ni

Solvent Partc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#solvent_part

A solvent can consist of a mixture of different molecules. For each molecule a solvent part with the ratio and the molecule is created.
is in domain of
ratio dp, used solvent op
is in range of
used solvent part op

Sourcec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#source

Source of the glycan or glycoconjugate. The source can be a biological organism that the compound was found in, a synthesis procedure trying to reproduce a natural glycan or a modeling approach for the glycan.
has super-classes
Thing c
has sub-classes
Source Modeled c, Source Natural c, Source Natural c, Source Sample c, Source Synthetic c
is in domain of
has reference op
is in range of
from_sample op, is from source op

Source Modeledc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#source_modeled

Class for modeled source. Instance contain information about the software used for modeling and the target organism.
has super-classes
Source c
is in domain of
has destination organism op, is fragment dp, used software op

Source Naturalc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Source_natural

Initial class name is capitalized. "glycan:Source_natural"
is equivalent to
Source Natural c
has super-classes
Source c

Source Naturalc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#source_natural

Class for sources from biological organism. Instances contain information about the species, cell type, tissue and so on.
has super-classes
Source c
is in domain of
has cell line dp, has cell type dp, has disease dp, has fluid dp, has life stage dp, has organ dp, has sample type op, has taxon op, has tissue dp, hosted by op, hybrid with op
is in range of
has destination organism op, hosted by op, hybrid with op

Source Samplec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#source_sample

Class for source from sample. Instance contain sample type.
has super-classes
Source c
is in range of
has sample type op

Source Syntheticc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#source_synthetic

Class for source for synthetic glycans. In contains information about the type of synthesis approach used and if applicable the original biological source that was tried to mimic.
has super-classes
Source c
is in domain of
has destination organism op, has synthesis type op, is fragment dp

Subspectrumc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#subspectrum

Subspectrum of NMR data. It contains the annotated signals.
has super-classes
NMR Property c
is in domain of
has linkage path dp, has residue op, has signal op
is in range of
has subspectrum op

Substituentc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent

Substition of a monosaccharide by another molecule. The substituent consists of the substituent type and the linkage between monosaccharide and substituent. For example: http://www.monosaccharidedb.org/rdf/substituent/ethyl.rdf
has super-classes
Monosaccharide Property c
is in domain of
has substituent linkage op, has substituent type op, has substitution name dp, has valence dp, is fuzzy dp, is linkable dp
is in range of
has external substituent op, has substitution op

Substituent Linkagec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_linkage

Linkage between a monosaccharide basetype and a substituent. It consist of the linkage position on the basetype side and the substituent side, and of the linkage type.
has super-classes
Monosaccharide Property c
is in domain of
has basetype linkage position dp, has linkage type op, has substituent linkage position dp, has substituent linkage position2 dp
is in range of
has substituent linkage op

Substituent Typec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type

List of substituent types possible on monosaccharides.
has super-classes
Monosaccharide Property c
is in domain of
has default linkage bondorder dp, has default linkage bondorder2 dp, has default linkage type op, has default linkage type2 op, has default linking position dp, has default linking position2 dp
is in range of
has substituent type op
has members
acetyl ni, amino ni, bromo ni, chloro ni, ethanolamine ni, ethyl ni, fluoro ni, formyl ni, glycolyl ni, hydroxymethyl ni, imino ni, iodo ni, methyl ni, n acetyl ni, n alanine ni, n dimethyl ni, n ethyl ni, n formyl ni, n glycolyl ni, n methyl ni, n succinate ni, n sulfate ni, n trifluoroacetyl ni, n trimethyl ni, nitrat ni, phosphate ni, r lactate ni, r pyruvate ni, s lactate ni, s methyl ni, s pyruvate ni, seleno ni, sulfate ni, telluro ni, thio ni, trifluoroacetyl ni, x lactate ni, x pyruvate ni

Sulfotransferase Reactionc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#sulfotransferase_reaction

Instances of this class are sulfotransferase reactions that modifies glycans or glycoconjugates by attaching sulfuric moiety to them.
has super-classes
Reaction c

Symbol Formatc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#symbol_format

Graphical symbol formats used to represent glycans. This includes the symbol format form the CFG and from UOXF.
is in range of
has symbol format op
has members
cfg ni, cfg bw ni, text ni, uoxf ni, uoxf bw ni

Synthetic Typec back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#synthetic_type

Type of synthesis used for creating the glycan. Possible values are chemical synthesis, enzymatic synthesis and chemoenzymetic synthesis.
is in range of
has synthesis type op
has members
chemical ni, chemoenzymatic ni, enzymatic ni

Taxonc back to ToC or Class ToC

IRI: http://www.uniprot.org/core/Taxon

Uniprot taxon class.

Wurcsc back to ToC or Class ToC

IRI: http://purl.jp/bio/12/glyco/glycan#Wurcs

This class depicts a WURCS format of glycans
has super-classes
Carbohydrate Format c
is disjoint with
Glycam c, Glyco C T c, Iupac Condensed c, Iupac Extended c, Linear Code c

Object Properties

captured byop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#captured_by

Object is compounds that have affinity to glycan or glycoconjugate.

has characteristics: functional

has domain
Evidence Binding c
has range
Glycan Binder c

catalyzed byop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#catalyzed_by

Object is a reaction process.
has sub-properties
degraded by op, synthesized by op
has range
Reaction c

configurationop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_configuration

Instance of class is configuration.
has domain
Basetype c
has range
Configuration c

contained inop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#contained_in

The subject is a structurally defined motif, and the object is a glycan structure or motif.
has domain
Glycan Motif c
is inverse of
has motif op

degraded byop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#degraded_by

Object is a reaction process, which degrades the subject.
has super-properties
catalyzed by op
has range
Glycosyl Hydrolase Reaction c

from_sampleop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#from_sample

A brief descripition of the sample analysed. This may be required if taxon, tissue, and disease are not sufficient. An example may include analysis of a sample with no specified background e.g. commerical project.
has super-properties
top Object Property op
has domain
Referenced Compound c
has range
Source c

glycosylatesop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycosylates

has domain
Saccharide c
has range
Glycosylation Site c

has absolute configurationop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_absolute_configuration

Subject is a monosaccharide basetype. The object values for the predicate can be D, L or unknown.

has characteristics: functional

has domain
Configuration c
has range
Absolute Configuration c

has adductop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_adduct

has domain
MS Annotation c
has range
Adduct c

has affinity toop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_affinity_to

Subject is a glycan or glycoconjugate, which non-covalently binds to the object, usually :glycan_binder.
has range
Glycan Binder c

has aglyconop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_aglycon

This property is used to specify the aglycon portion of a glycoconjugate compound.
has domain
Glycoconjugate c
has range
Aglycon c

has aliasop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_alias

reference to aliases for the monosaccharide

has characteristics: transitive

has domain
Monosaccharide c
has range
Monosaccharide Alias c

has alternative nameop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_alternative_name

Name of compound. Use if name is not with compliant with Oxford Shorthand format, IUPAC, GlycoCT/WURCS, or Motif/Epitope.

has characteristics: symmetric

has domain
Referenced Compound c

has amino acid typeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_amino_acid_type

has characteristics: functional

has domain
Glycosylated Amino Acid c
has range
Amino Acid c

has anomerop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_anomer

Anomeric state of the basetype.

has characteristics: functional

has domain
Basetype c
has range
Anomer c

has archetypeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_archetype

has domain
Saccharide c
has range
Archetype c

has associationop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_association

has domain
Referenced Compound c

has attached glycanop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_attached_glycan

This property is used to specify a glycan portion of a glycoconjugate compound.
has domain
Glycoconjugate c

has basetypeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_basetype

Object is the basetype of the monosaccharide (subject).

has characteristics: functional

has domain
Monosaccharide c
has range
Basetype c

has categoryop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_category

category of a glycan database
has domain
Glycan Database c
has range
Glycan Database Category c

has ce electrogramop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_ce_electrogram

Glycan annotation with associated CE electrogram evidence
has super-properties
top Object Property op
has domain
Evidence CE c
has range
CE Electrogram c

has ce peakop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_ce_peak

Peak description
has super-properties
top Object Property op
has domain
CE Digest Electrogram c
CE Electrogram c
has range
CE Property c

has codeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_code

Code for compound. This may be linked with a commerically available compound and its catalogue number or in-house available compound e.g. synthesied standard.
has super-properties
top Object Property op

has componentop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_component

Object is a component, representing the monosaccharide composition of the subject.
has range
Component c

has core modificationop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_core_modification

reference to another RDF describing a core modification that is present in this basetype
has domain
Basetype c
has range
Core Modification c

has default linkage typeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_default_linkage_type

Instances of this class are linkage type .
has domain
Substituent Type c
has range
Linkage Type c

has default linkage type2op back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_default_linkage_type2

Instances of this class are second linkage type.
has domain
Substituent Type c
has range
Linkage Type c

has destination organismop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_destination_organism

glycan of which organism authors wanted to synthesize or model

has characteristics: functional

has domain
Source Modeled c or Source Synthetic c
has range
Source Natural c

has enzymeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_enzyme

Object is an enzyme, which performs the reaction.
has domain
LC Digest Chromatogram c or Reaction c
has range
Enzyme c

has epitopeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_epitope

The object is a structural motif with biological relevance; subproperty of has_motif.
has super-properties
has motif op
has range
Glycan Epitope c

has evidenceop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_evidence

evidence for a given set of information (glycan, publication). An evidence can be any type of experimental data.
has domain
Referenced Compound c
has range
Evidence c

has exoglycosidase chromatogramop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_exoglycosidase_chromatogram

Relation to exoglycosidase treated sample
has domain
LC Chromatogram c
has range
LC Digest Chromatogram c

has exoglycosidase electrogramop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_exoglycosidase_electrogram

has super-properties
top Object Property op
has domain
CE Digest Electrogram c
Referenced Compound c
has range
Referenced Compound c

has exoglycosidase treatmentop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_exoglycosidase_treatment

has characteristics: functional

has domain
LC Digest Chromatogram c
has range
Reaction c

has external substituentop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_external_substituent

Reference to a :substituent.
has domain
Monosaccharide Alias c
has range
Substituent c

has first configurationop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_first_configuration

Reference to another RDF resource with URI describing the first monosaccharide configuration

has characteristics: functional

has domain
Basetype c
has range
Configuration c

has fragment typeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_fragment_type

has domain
MS Annotation c
has range
MS Fragment Type c

has fragmented spectrumop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_fragmented_spectrum

has domain
Mass Spectrum c
has range
Msn Spectrum c

has glycanop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_glycan

The glycan object referenced by this subject.

has characteristics: functional

has super-properties
has_compound op
has domain
Referenced Compound c

has glycan formatop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_glycan_format

This object property links Glycan class to glycanFormat class
has domain
has glycan format op some Saccharide c
has range
has glycan format op some Carbohydrate Format c

has glycoconjugate sequenceop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_glycoconjugate_sequence

Sequence information to object of rdf:type :glycoconjugate_sequence if the subject is part of a glycoconjugate.
has domain
Motif c
has range
Glycoconjugate Sequence c

has glycosequenceop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_glycosequence

glycan sequence information to object of rdf:type :glycosequence representing the subject in a text format.
has domain
Motif c
has range
Glycosequence c

has glycosylated A Aop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_glycosylated_AA

This property is used to specify a glycosylated amino acid residue in an object glycoprotein or glycopeptide.
has domain
Glycopeptide c or Glycoprotein c
has range
Glycosylated Amino Acid c

has imageop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_image

Object is a URI to an image instance describing a graphical representation of the glycan.
has range
Image c

has ionop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_ion

has characteristics: functional

has domain
Adduct c
has range
Adduct Ion c

has ionisation typeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_ionisation_type

has domain
Mass Spectrometry Device c
has range
Ionization Type c

has lc annotationop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_lc_annotation

has domain
LC Peak c
has range
Compound c

has lc chromatogramop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_lc_chromatogram

has domain
Evidence LC c or Evidence LC MS c
has range
LC Chromatogram c

has lc chromatogram peakop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_lc_chromatogram_peak

Peak description
has domain
LC Chromatogram c
has range
LC Peak c

has linkage typeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_linkage_type

GlycoCT linkage type of the monosaccharide to the substituent

has characteristics: functional

has domain
Substituent Linkage c
has range
Linkage Type c

has mass analyzerop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_mass_analyzer

has domain
Mass Spectrometry Device c
has range
Mass Analyzer Type c

has mass spectrometry peakop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_mass_spectrometry_peak

has domain
Mass Spectrum c
has range
MS Peak c

has mass spectrumop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_mass_spectrum

has domain
Evidence MS c
has range
Mass Spectrum c

has monosaccharideop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_monosaccharide

URI to a RDF resource describing the monosaccharide (usually MonosaccharideDB).

has characteristics: functional

has domain
Component c
has range
Monosaccharide c

has monosaccharide notation schemeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_monosaccharide_notation_scheme

One of GLYCOSCIENCES, GLYCOCT, IUPAC, CARBBANK, CFG, BCSDB, PDB, or GLYCAM, see http://www.monosaccharidedb.org/notation.action?topic=schemes

has characteristics: functional

has domain
Monosaccharide Alias c
has range
Monosaccharide Notation Scheme c

has motifop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_motif

The object is a structurally defined motif E.g. for Neo-lacto motif http://jcggdb.jp/idb/motif?id=JCGG-MOTIF3009.rdf inverse of ”contained_in”. should have sequence, composition, image ...
has sub-properties
has epitope op
has range
Glycan Motif c
is inverse of
contained in op

has ms annotationop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_ms_annotation

has domain
MS Peak c
has range
MS Annotation c

has ms modelop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_ms_model

has characteristics: functional

has domain
Mass Spectrometry Device c
has range
Instrument Model c

has neutral lossop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_neutral_loss

has domain
MS Annotation c
has range
Neutral Loss c

has peptideop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_peptide

has characteristics: functional

has domain
Evidence IGOT c
has range
Glycopeptide c

has polymerization degreeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_polymerization_degree

Used only if the specified glycan structure (subject) itself is the oligomeric part forming a repeating unit. Repeating unit information to object of rdf:type :repeat_count.
has domain
Polysaccharide c
has range
Polymerization Degree c

has precursor peakop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_precursor_peak

URI of the precursor peak of a MS^n spectra.
has domain
Evidence MS c
has range
MS Peak c

has productop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_product

Object is generated by the reaction.
has domain
Reaction c

has protein nameop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_protein_name

Protein name in accordance with UniProt accession with information available.
has domain
Protein c

has referenceop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_reference

Reference between :compound, :citation, :evidence, :source and :referenced_compound.
has domain
Citation c or Compound c or Evidence c or Source c
has range
Referenced Compound c

has relative configurationop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_relative_configuration

IUPAC monosaccharide basetype information. Without absolute configuration D or L

has characteristics: functional

has domain
Configuration c
has range
Relative Configuration c

has repeat attributeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_repeat_attribute

(min, max, exact, average, unknown) part of repeating unit

has characteristics: functional

has domain
Polymerization Degree c
has range
Repeat Attribute c

has residueop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_residue

Monosaccharide annotation of the subspectrum.

has characteristics: functional

has domain
Subspectrum c
has range
Monosaccharide c

has resource entryop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_resource_entry

Assigns a resource entry to a compound.
has domain
Compound c or Referenced Compound c
has range
Resource Entry c

has ring typeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_ring_type

Assigns the ring type to a basetype.

has characteristics: functional

has domain
Basetype c
has range
Ring Type c

has sample typeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_sample_type

Sample type of the source.
has domain
Source Natural c
has range
Source Sample c

has second configurationop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_second_configuration

Reference to another RDF resource with URI describing the second monosaccharide configuration in case there are more than four stereocenters

has characteristics: functional

has domain
Basetype c
has range
Configuration c

has signalop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_signal

Resource to a :signal
has domain
Subspectrum c
has range
Signal c

has subspectrumop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_subspectrum

has domain
Evidence NMR c
has range
Subspectrum c

has substituent linkageop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_substituent_linkage

linkage of the substituent
has domain
Substituent c
has range
Substituent Linkage c

has substituent typeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_substituent_type

linkage type of the substituent

has characteristics: functional

has domain
Substituent c
has range
Substituent Type c

has substitutionop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_substitution

The substituent is linked to the basetype in this monosaccharide.
has domain
Monosaccharide c
has range
Substituent c

has substrateop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_substrate

Object is consumed by the reaction.
has domain
Reaction c

has symbol formatop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_symbol_format

URL to explanation of symbol? The display style of the glycan. (cfg, uoxf, atoms)

has characteristics: functional

has domain
Image c
has range
Symbol Format c

has synthesis typeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_synthesis_type

Allows to specify the synthesis type used to generated the glycan.

has characteristics: functional

has domain
Source Synthetic c
has range
Synthetic Type c

has taxonop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_taxon

Species information of the source.

has characteristics: functional

has domain
Source Natural c

has third configurationop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_third_configuration

Reference to another RDF resource with URI describing the third monosaccharide configuration in case there are more than eight stereocenters

has characteristics: functional

has domain
Basetype c
has range
Configuration c

has unassigned signalop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_unassigned_signal

Link to an unassigned signal which is just a chemical shift.
has domain
Evidence NMR c
has range
Signal c

has uniprot accessionop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_uniprot_accession

When the subject of this predicate is :glycoprotein, the range instance is equivalent to proteineous part of the subject glycoprotein.

has characteristics: functional, inverse functional

has domain
Glycopeptide c or Glycoprotein c or Protein c
has range
Protein c

has_compoundop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_compound

has sub-properties
has glycan op
has domain
Referenced Compound c
has range
Compound c

has_core_modification_typeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_core_modification_type

Type of the core modification. Instances of class are core modification types.

has characteristics: functional

has domain
Core Modification c
has range
Core Modification Type c

has_uoxfop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_uoxf

Glycan sequence in a text format.
has super-properties
top Object Property op

hosted byop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#hosted_by

Reference to another biological source representing the host organism.

has characteristics: functional

has domain
Source Natural c
has range
Source Natural c

hybrid withop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#hybrid_with

An offspring of two different taxons.

has characteristics: symmetric

has domain
Source Natural c
has range
Source Natural c

in carbohydrate formatop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#in_carbohydrate_format

carbohydrate sequence format of the sequence given in the glycosequence instance

has characteristics: functional

has domain
Sequence c
has range
Carbohydrate Format c

in glycan databaseop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#in_glycan_database

Glycan is present in the glycan database specified by the URI.

has characteristics: functional

has domain
Resource Entry c
has range
Glycan Database c

is archetype ofop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#is_archetype_of

has domain
Archetype c
has range
Saccharide c

is from profileop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#is_from_profile

A profile can have many peaks and saccharides. It represents a single LC run (parent or digest).
has super-properties
top Object Property op
has domain
Evidence c
Referenced Compound c
has range
Referenced Compound c

is from reportop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#is_from_report

Reference to a report (internal, contract, method development or similar) with no associated publication.
has super-properties
top Object Property op
has domain
Referenced Compound c
has range
Referenced Compound c

is from sourceop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#is_from_source

Source annotation for a referenced compound.
has domain
Referenced Compound c
has range
Source c

is glycosylated onop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#is_glycosylated_on

has domain
Glycoconjugate c
has range
Glycosylation Site c

modification typeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#modification_type

Modification type is represented due to biological process, typically N-linked or O-linked.

has characteristics: functional

has domain
Glycosylated Amino Acid c
has range
Glycosylation Annotation c

published inop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#published_in

Reference information for the subject.

has characteristics: functional

has domain
Evidence c or Referenced Compound c
has range
Citation c

synthesized byop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#synthesized_by

Object is a reaction process, which synthesizes the subject.
has super-properties
catalyzed by op
has range
Glycosyltransferase Reaction c

used bufferop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_buffer

Link to buffer information, such as http://en.wikipedia.org/wiki/Phosphate_buffered_saline.
has domain
Evidence NMR c or Reaction c
has range
Buffer c

used columnop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_column

has characteristics: functional

has domain
Evidence LC MS c
has range
LC Column c

used lc gradientop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_lc_gradient

Solvent gradient explained by change in composition with respect to time.
has domain
Evidence LC c or Evidence LC MS c
has range
Gradient c

used moleculeop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_molecule

has domain
Evidence LC c or Evidence LC MS c
has range
Compound c

used msop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_ms

has characteristics: functional

has domain
Evidence MS c
has range
Mass Spectrometry Device c

used reference standardop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_reference_standard

reference_standard is the accepted internal/external standard for calibrating chemical shift for NMR spectroscopy.
has domain
Evidence NMR c
has range
Compound c

used softwareop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_software

Software used to model the molecule.
has domain
Source Modeled c
has range
Software c

used solventop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_solvent

The predicate links the solvent part with the actually solvent (such as https://www.ebi.ac.uk/chebi/searchId.do?chebiId=41981). Object is an instance of glycan:solvent.

has characteristics: functional

has domain
Solvent Part c
has range
Solvent c

used solvent partop back to ToC or Object Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_solvent_part

has domain
Evidence NMR c
has range
Solvent Part c

Data Properties

author Listdp back to ToC or Data Property ToC

IRI: http://purl.org/ontology/bibo/authorList

has domain
Citation c
has range
Literal

elucidateddp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#elucidated

if this glycan was elucidated (rather than just studied) in this publication

has characteristics: functional

has domain
Referenced Compound c
has range
boolean

has A A sequencedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_AA_sequence

Amino acid sequence is represented in the standard IUPAC-IUB amino acid code. Even if any modification are known, any modified amino acid residues are represented with a single letter of a nascent residue.

has characteristics: functional

has domain
Glycopeptide c or Glycoprotein c or Peptide c or Protein c
has range
string

has abbreviationdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_abbreviation

Abbreviation of the database

has characteristics: functional

has domain
Glycan Database c
has range
string

has affinity valuedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_affinity_value

Binding affinity value for the lectin or antibody.

has characteristics: functional

has domain
Evidence Binding c
has range
double

has alias namedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_alias_name

Alias name of a monosaccharide.
has domain
Monosaccharide Alias c
has range
string

has arabinose unitdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_arabinose_unit

Structure has an arabinose unit
has super-properties
top Data Property dp
has domain
Evidence CE c
Evidence LC c
LC Peak c
has range
double

has average molecular weightdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_average_molecular_weight

literal numeric with decimal, calculated from monosaccharide composition with average atomic weight

has characteristics: functional

has domain
Monosaccharide c
has range
double

has basetype iddp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_basetype_id

Id of the basetype in MonosaccharideDB.

has characteristics: functional

has domain
Basetype c
has range
integer

has basetype linkage positiondp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_basetype_linkage_position

Linkage position at the basetype.

has characteristics: functional

has domain
Substituent Linkage c
has range
integer

has cardinalitydp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_cardinality

Number of occurrences of an element (e.g. a monosaccharide) in the subject. This information can be missing in case the cardinality cannot be defined (e.g. repeat units with unknown or under-defined repeats). Missing for non-stoichiometrical residues.

has characteristics: functional

has domain
Component c
has range
integer

has cardinality per repeatdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_cardinality_per_repeat

Number of occurrences of an element (e.g. a monosaccharide) in the repeat unit. Applicable to :repeatUnits only. Missing for non-stoichiometrical residues.

has characteristics: functional

has domain
Component c
has range
integer

has cell linedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_cell_line

Cell line information of the source

has characteristics: functional

has domain
Source Natural c
has range
any U R I

has cell typedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_cell_type

Cell type information of the source

has characteristics: functional

has domain
Source Natural c
has range
any U R I

has chargedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_charge

Charge state of the MS peak
has domain
MS Peak c
has range
integer

has chemical formuladp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_chemical_formula

has characteristics: functional

has domain
Neutral Loss c
has range
string

has chemical shiftdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_chemical_shift

chemical shift (may be multiple e.g. for CH2 groups in 1H spectra. May be missing if unknown)
has sub-properties
has chemical shift max dp, has chemical shift min dp
has domain
Signal c
has range
double

has chemical shift maxdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_chemical_shift_max

Maximum value of chemical shift.

has characteristics: functional

has super-properties
has chemical shift dp
has domain
Signal c
has range
double

has chemical shift mindp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_chemical_shift_min

Minimum value of chemical shift.

has characteristics: functional

has super-properties
has chemical shift dp
has domain
Signal c
has range
double

has countdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_count

has characteristics: functional

has domain
Adduct c or Neutral Loss c
has range
integer

has coupling constantdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_coupling_constant

values in Hz
has domain
Signal c
has range
double

has default linkage bondorderdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_default_linkage_bondorder

Object is bond order that is number of linkage in default.
has domain
Substituent Type c
has range
float

has default linkage bondorder2dp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_default_linkage_bondorder2

Object is second bond order that is number of linkage in default.
has domain
Substituent Type c
has range
float

has default linking positiondp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_default_linking_position

A position that is number of linkage in default.
has domain
Substituent Type c
has range
integer

has default linking position2dp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_default_linking_position2

A position that is number of second linkage in default.
has domain
Substituent Type c
has range
integer

has diameterdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_diameter

diameter of the column in micro meter

has characteristics: functional

has domain
LC Column c
has range
double

has diseasedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_disease

MESH reference for disease
has domain
Source Natural c
has range
any U R I

has extended stereocodedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_extended_stereocode

Extended stereocode of the basetype

has characteristics: functional

has domain
Basetype c
has range
string

has fluiddp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_fluid

either tissue or fluid
has domain
Source Natural c
has range
any U R I

has fragmentdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_fragment

sequence as peak annotation

has characteristics: functional

has domain
MS Annotation c
has range
string

has glucose unitdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_glucose_unit

Structure has an glucose unit
has super-properties
top Data Property dp
has domain
Evidence CE c
Evidence LC c
LC Peak c
has range
double

has intensitydp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_intensity

intensity value of the MS peak

has characteristics: functional

has domain
MS Peak c
has range
double

has keyworddp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_keyword

Keyword for the publication. Object is a URI in MeSH.
has domain
Citation c
has range
any U R I

has lengthdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_length

Length of the column in milli meter

has characteristics: functional

has domain
LC Column c
has range
double

has life stagedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_life_stage

Life stage information of the source.

has characteristics: functional

has domain
Source Natural c
has range
any U R I

has linkage pathdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_linkage_path

path from the reducing end or from the rightmost residue in repeat

has characteristics: functional

has domain
Subspectrum c
has range
string

has linkage positiondp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_linkage_position

Monosaccharide can be linked to other residues via standard glycosidic linkage at the given backbone position.
has domain
Monosaccharide c
has range
integer

has manufacturerdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_manufacturer

Manufacturer of the device used in the experiment.

has characteristics: functional

has domain
Evidence c
has range
string

has materialdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_material

Column packing material

has characteristics: functional

has domain
LC Column c
has range
string

has methoddp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_method

experimental procedures described in the article
has domain
Citation c
has range
any U R I

has missing signals maxdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_missing_signals_max

has domain
Evidence NMR c
has range
integer

has missing signals mindp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_missing_signals_min

has domain
Evidence NMR c
has range
integer

has modeldp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_model

Model of the device used in the experiment.

has characteristics: functional

has domain
Evidence c
has range
string

has modification positiondp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_modification_position

Position of the modification at the monosaccharide.

has characteristics: functional

has domain
Core Modification c
has range
integer

has modification position2dp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_modification_position2

Second position of the modification at the monosaccharide (eg. for double bounds)

has characteristics: functional

has domain
Core Modification c
has range
integer

has monoisotopic molecular weightdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_monoisotopic_molecular_weight

Literal numeric with decimal, calculated from monosaccharide composition with atomic weight of monoisotope.

has characteristics: functional

has domain
Monosaccharide c
has range
double

has ms leveldp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_ms_level

has characteristics: functional

has domain
Mass Spectrum c
has range
integer

has msdb iddp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_msdb_id

Id of the monosaccharide in MonosaccharideDB.

has characteristics: functional

has domain
Monosaccharide c
has range
integer

has multiplicitydp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_multiplicity

single-character literal (S,M,D,T ,Q) or combination

has characteristics: functional

has domain
Signal c
has range
string

has mzdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_mz

MZ value of the MS peak

has characteristics: functional

has domain
MS Peak c
has range
double

has nucleusdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_nucleus

Nucleus
has domain
Evidence NMR c
has range
string

has organdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_organ

Organ of the source.

has characteristics: functional

has domain
Source Natural c
has range
any U R I

has particle sizedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_particle_size

Size of the particle in micro meter.

has characteristics: functional

has domain
LC Column c
has range
double

has peak areadp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_peak_area

Integrated peak area.

has characteristics: functional

has domain
LC Peak c
has range
double

has pmiddp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_pmid

has domain
Citation c
has range
integer

has repeat countdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_repeat_count

value of repeat_attribute in resource, if known

has characteristics: functional

has domain
Polymerization Degree c
has range
positive Integer

has retention timedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_retention_time

Retention time of the molecule in the experiment in minutes.

has characteristics: functional

has domain
LC Peak c or Msn Spectrum c
has range
double

has ring enddp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_ring_end

position of last carbon involved in ring closure

has characteristics: functional

has domain
Basetype c
has range
integer

has ring startdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_ring_start

position of first carbon involved in ring closure

has characteristics: functional

has domain
Basetype c
has range
integer

has sequencedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_sequence

Sequence of the Glycan

has characteristics: functional

has domain
Sequence c
has range
string

has sizedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_size

number of backbone carbon atoms

has characteristics: functional

has domain
Basetype c
has range
integer

has stereocodedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_stereocode

Stereocode describing the backbone stereochemistry

has characteristics: functional

has domain
Basetype c
has range
string

has straindp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_strain

Object is bacterial strain.

has structure locationdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_structure_location

The location of the referenced compound in a publication (e.g. Figure 1).
has domain
Referenced Compound c
has range
string

has substituent linkage positiondp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_substituent_linkage_position

Linkage position at the substituent.

has characteristics: functional

has domain
Substituent Linkage c
has range
integer

has substituent linkage position2dp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_substituent_linkage_position2

Second linkage position at the substituent.

has characteristics: functional

has domain
Substituent Linkage c
has range
integer

has substitution namedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_substitution_name

Name of substitution.
has domain
Substituent c
has range
string

has tissuedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_tissue

either tissue or fluid

has characteristics: functional

has domain
Source Natural c
has range
any U R I

has url templatedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_url_template

xsd:string such as http://foo.bar.com/someglycan?id=%s

has characteristics: functional

has domain
Glycan Database c
has range
string

has valencedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_valence

Object is a valence of substituent.
has domain
Substituent c
has range
integer

has versiondp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_version

Version of the software used

has characteristics: functional

has domain
Software c
has range
string

has_phase_descriptiondp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#has_phase_description

Description / short hand of the phase e.g. HILIC, PGC
has super-properties
top Data Property dp
has domain
Evidence LC c
LC Column c
has range
string

injection volumedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#injection_volume

has characteristics: functional

has domain
Evidence LC c or Evidence LC MS c
has range
double

is ambiguousdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#is_ambiguous

Boolean indicating whether the subject is a fully defined structure including all linkage information, or not.

has characteristics: functional

has range
boolean

is fragmentdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#is_fragment

If the synthesised or modeled molecule is just a fragment or the complete target molecule

has characteristics: functional

has domain
Source Modeled c or Source Synthetic c
has range
boolean

is fuzzydp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#is_fuzzy

If a substituent is fuzzy.
has domain
Substituent c
has range
boolean

is linkabledp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#is_linkable

If a substituent is linkable.
has domain
Substituent c
has range
boolean

is missingdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#is_missing

If true unassigned signal. NO if a signal can not exist, rather than its unknown.

has characteristics: functional

has domain
Signal c
has range
boolean

is primary namedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#is_primary_name

indicates whether this is the name that should be used to uniquely identify this monosaccharide in the given :notation_scheme, or whether this is a secondary alias name (e.g. to indicate whether a trivial name or a systematic name is to be used preferentially in case a trivial name exists for this monosaccharide)

has characteristics: functional

has domain
Monosaccharide Alias c
has range
boolean

is trivial namedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#is_trivial_name

Indicates whether this is a trivial name that implies modifications, or a systematic name (e.g. KDO vs. D-3-deoxy-manOct2ulo-onic)

has characteristics: functional

has domain
Monosaccharide Alias c
has range
boolean

issueddp back to ToC or Data Property ToC

IRI: http://purl.org/dc/terms/issued

Publication year
has domain
Citation c
has range
integer

of carbon numberdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#of_carbon_number

carbon atom number

has characteristics: functional

has domain
Signal c
has range
integer

page Enddp back to ToC or Data Property ToC

IRI: http://purl.org/ontology/bibo/pageEnd

has characteristics: functional

has domain
Citation c
has range
string

page Startdp back to ToC or Data Property ToC

IRI: http://purl.org/ontology/bibo/pageStart

has characteristics: functional

has domain
Citation c
has range
string

publisherdp back to ToC or Data Property ToC

IRI: http://purl.org/dc/elements/1.1/publisher

has characteristics: functional

has domain
Citation c
has range
string

ratiodp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ratio

Ratio of a solvent in a solvent mixture. (100 if there is only one solvent)

has characteristics: functional

has domain
Solvent Part c
has range
double

short Titledp back to ToC or Data Property ToC

IRI: http://purl.org/ontology/bibo/shortTitle

has domain
Citation c
has range
string

titledp back to ToC or Data Property ToC

IRI: http://purl.org/dc/elements/1.1/title

has domain
Citation c
has range
string

used amount mgdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_amount_mg

sample weight.
has domain
Evidence NMR c
has range
double

used column temperaturedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_column_temperature

Column temperature in C.

has characteristics: functional

has domain
Evidence LC c or Evidence LC MS c
has range
double

used concentrationdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_concentration

sample concentration.
has domain
Evidence NMR c
has range
Literal

used frequencydp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_frequency

frequency of NMR spectrometer.
has domain
Evidence NMR c
has range
double

used lc flow ratedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_lc_flow_rate

Flow rate refers to the flow of mobile phase through the column and is measured in ml/min.

has characteristics: functional

has domain
Evidence LC c or Evidence LC MS c
has range
string

used lc run timedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_lc_run_time

Runtime of the LC

has characteristics: functional

has domain
Gradient c
has range
string

used percent maxdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_percent_max

has characteristics: functional

has domain
Gradient c
has range
double

used percent mindp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_percent_min

has characteristics: functional

has domain
Gradient c
has range
double

used phdp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_ph

pH of solution

has characteristics: functional

has domain
Evidence NMR c
has range
double

used temperaturedp back to ToC or Data Property ToC

IRI: http://purl.jp/bio/12/glyco/glycan#used_temperature

value or range in K (literal)

has characteristics: functional

has domain
Evidence NMR c
has range
string

volumedp back to ToC or Data Property ToC

IRI: http://purl.org/ontology/bibo/volume

has characteristics: functional

has domain
Citation c
has range
string

Annotation Properties

creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/creator

dateap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/date

nameap back to ToC or Annotation Property ToC

IRI: http://xmlns.com/foaf/0.1/name

Named Individuals

2-aminoacridoneni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#aminoacridone

Glycan labelled with 2-aminoacridone
belongs to
Label c

2-aminobenzamideni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#aminobenzamide

Glycan labelled with 2-aminobenzamide
belongs to
Label c

2-aminobenzoic acidni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#aminobenzoic_acid

Glycan labelled with 2-aminobenzoic acid
belongs to
Label c

2-aminopyridineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#aminopyridine

Glycan labelled with 2-aminopyridine
belongs to
Label c

8-aminonaphthalene-1,3,6-trisulfonic acidni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#trisulfonic_acid

Glycan labelled with 8-aminonaphthalene-1,3,6-trisulfonic acid
belongs to
Label c

9-aminopyrene-1,3,6-trifulfonic acidni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#trifulfonic_acid

Glycan labelled with 9-aminopyrene-1,3,6-trifulfonic acid
belongs to
Label c

Ani back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ms_fragment_type_a

belongs to
MS Fragment Type c

acetylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_acetyl

COCH3
belongs to
Substituent Type c

acidni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification_type_acid

Carboxyl (COOH) group.
belongs to
Core Modification Type c

Alanineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#alanine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

aldini back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification_type_aldi

Alditol: Reduction of the aldehyde group to CH2OH.
belongs to
Core Modification Type c

alloni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#allo

belongs to
Relative Configuration c

alphani back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#anomer_alpha

belongs to
Anomer c

alpha-N-acetylgalactosaminidaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#alpha-N-acetylgalactosaminidase

Glycan(s) treated with alpha-N-acetylgalactosaminidase that catalyzes the hydrolysis of α-linked D-N-acetylgalactosamine
belongs to
Glycosidase Treatment c

alpha1-2 Fucosidaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#alpha1-2_Fucosidase

Glycan(s) treated with alpha1-2 Fucosidase that catalyses the hydrolysis of linear α1-2 linked L-fucopyranosyl residues
belongs to
Glycosidase Treatment c

alpha1-2,3 Mannosidaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#_Mannosidase

Glycan(s) treated with alpha1-2,3 Mannosidase that catalyses the hydrolysis of α1-2 and α1-3 linked D-Mannopyranosyl residues
belongs to
Glycosidase Treatment c

alpha1-2,4,6 Fucosidaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#_Fucosidase

Glycan(s) treated with alpha1-2,4,6 Fucosidase that catalyses the hydrolysis of α1-2, α1-4, and α1-6 linked L-fucopyranosyl residues
belongs to
Glycosidase Treatment c

alpha1-3,4,6 Galactosidaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#_Galactosidase

Glycan(s) treated with alpha1-3,6 Galactosidase that catalyses the hydrolysis of α1-3,6 linked D-galactopyranosyl residues
belongs to
Glycosidase Treatment c

alpha1-6 Mannosidaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#alpha1-6_Mannosidase

Glycan(s) treated with alpha1-6 Mannosidase that removes α1-6 linked D-mannopyranosyl residues.
belongs to
Glycosidase Treatment c

alpha2-3 Neuraminidaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#alpha2-3_Neuraminidase

Glycan(s) treated with alpha2-3 Neuraminidase that catalyses the hydrolysis of α2-3 N-acetyl-neuraminic acid residues from oligosaccharides. Note some α2-6 linked removed at a lower rate.
belongs to
Glycosidase Treatment c

alpha2-3 Neuraminidase Sni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#alpha2-3_Neuraminidase_S

Glycan treated with alpha2-3 Neuraminidase S
belongs to
Glycosidase Treatment c

alpha2-3,6,8 Neuraminidaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#_Neuraminidase

Glycan(s) treated with alpha2-3,6,8 Neuraminidase that removes α2-3, α2-6, and α2-8 linked N-acetyl-neuraminic acid residues
belongs to
Glycosidase Treatment c

alpha2-3,6,8,9 Neuraminidase Ani back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#_Neuraminidase_A

Glycan(s) treated with alpha2-3,6,8,9 Neuraminidase A that removed all terminal sialic acids. Note some enzymes release α2-3 and α2-6 linkages at a higher rate than α2-8 and α2-9.
belongs to
Glycosidase Treatment c

altroni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#altro

belongs to
Relative Configuration c

amber glycamni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_amber_glycam

Two-letter residue names used within the AMBER GLYCAM forcefield. For more information, see Carbohydrate Naming Convention in Glycam. Note (1): Monosaccharide alias names in GLYCAM notation also encode linkage positions (in the first character of a three-letter-code residue name). These depend on the context of a residue within an oligosaccharide and thus are no monosaccharide properties. GLYCAM names stored in MonosaccharideDB refer to a terminal residue. The first character might have to be adjusted according to the specific context of a residue, i.e. in case other residues linked are to the given one. Note (2): The GLYCAM notation is not yet supported by the notation parsing routines, i.e. GLYCAM alias names can be created, but not be read yet.
belongs to
Monosaccharide Notation Scheme c

aminoni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_amino

NH2
belongs to
Substituent Type c

anhydroni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification_type_anhydro

Intramolecular anhydride.
belongs to
Core Modification Type c

arabinoni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#arabino

belongs to
Relative Configuration c

arginineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#arginine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

asparagineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#asparagine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

aspartic acidni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#aspartic_acid

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

averageni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#repeat_attribute_average

belongs to
Repeat Attribute c

Bni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ms_fragment_type_b

belongs to
MS Fragment Type c

BCSDBni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_bcsdb

belongs to
Glycan Database c
has facts
has category op bibliography ni
has category op structure ni
has category op experimental ni
has category op taxonomy ni
has abbreviation dp "BCSDB"
has url template dp "http://csdb.glycoscience.ru/bacterial/core/search_id.php?mode=record&id_list=[?id?]"
name ap "Bacterial Carbohydrate Structure DataBase"

bcsdbni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_bcsdb

The notation used by the Russian BCSDB. For more information on this notation, see the description on the BCSDB homepage.
belongs to
Monosaccharide Notation Scheme c

betani back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#anomer_beta

belongs to
Anomer c

beta eliminationni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#beta_elimination

Beta elimination that released glycan from glycoconjugate.
belongs to
Chemical Release c

beta-N-Acetylglucosaminidaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#beta-N-Acetylglucosaminidase

Glycan(s) treated with beta-N-Acetylglucosaminidase that catalyses the hydrolysis of terminal, non-reducing β-N-Acetylglucosamine residues
belongs to
Glycosidase Treatment c

beta-N-Acetylglucosaminidase Sni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#beta-N-Acetylglucosaminidase_S

Glycan treated with beta-N-Acetylglucosaminidase S
belongs to
Glycosidase Treatment c

beta-N-Acetylhexosaminidaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#beta-N-Acetylhexosaminidase

Glycan treated with beta-N-Acetylhexosaminidase that catalyses the hydrolysis of terminal β-D-N-acetyl-galactosamine and glucosamine residues from oligosaccharides.
belongs to
Glycosidase Treatment c

beta1-3 Galactosidaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#beta1-3_Galactosidase

Glycan(s) treated with beta1-3 Galactosidase that catalyses the hydrolysis of β1-3 D-galactopyranosyl residues. Some enzymes known to cleave β1-6 but a lower rate.
belongs to
Glycosidase Treatment c

beta1-4 Galactosidaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#beta1-4_Galactosidase

Glycan(s) treated with beta1-4 Galactosidase that catalyses the hydrolysis of β1-4 linked D-galactopyranosyl residues.
belongs to
Glycosidase Treatment c

bibliographyni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_category_bibliography

belongs to
Glycan Database Category c

bromoni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_bromo

Br
belongs to
Substituent Type c

Cni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ms_fragment_type_c

belongs to
MS Fragment Type c

C D Cl3ni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#CDCl3

belongs to
Solvent c

C D3 O Dni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#CD3OD

belongs to
Solvent c

C5 D5 Nni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#C5D5N

belongs to
Solvent c

carbbankni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_carbbank

belongs to
Carbohydrate Format c

CarbBankni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_carbbank

belongs to
Glycan Database c
has facts
has abbreviation dp "CCSD"
has url template dp "http://www.genome.jp/dbget-bin/www_bget?carbbank+[?id?]"
name ap "Complex Carbohydrate Structure Database"

carbbankni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_carbbank

The CarbBank notation is based on the IUPAC extended notation. It is used by the Complex Carbohydrate Structure Database (CCSD), which is better known by the name of its query software "carbbank". CarbBank style notation forms the basis of several other notations, such as the Glycosciences.de scheme.
belongs to
Monosaccharide Notation Scheme c

carbohydrate conformationni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_category_carbohydrate_conformation

Database containing carbohydrate conformation
belongs to
Glycan Database Category c

carbohydrate interactionni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_category_carbohydrate_interaction

belongs to
Glycan Database Category c

Carintni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_carint

belongs to
Glycan Database c
has facts
has category op carbohydrate interaction ni
has abbreviation dp "Carint"
has url template dp "http://ws.glyconavi.org/carint/entry.php?id=[?id?]"
name ap "Carbohydrate Interaction Database"

CAZyni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_cazy

belongs to
Glycan Database c
has facts
has category op glycoenyzme ni
has abbreviation dp "CAZy"
has url template dp "http://www.cazy.org/[?id?].html"
name ap "Carbhoydrate-Active enZYmes"

ceni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_type_ce

belongs to
Evidence Type c

CFGni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_cfg

belongs to
Glycan Database c
has facts
has category op structure ni
has abbreviation dp "CFG"
has url template dp "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=[?id?]&sideMenu=no%0A%20%20%09%09"
name ap "Consortium for Functional Glycomics Structure Database"

cfgni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_cfg

The LinearCode notation used by the US Consortium for Functional Glycomics (CFG).
belongs to
Monosaccharide Notation Scheme c

cfgni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#symbol_format_cfg

A symbol is Consortium for Functional Glycomics (CFG) notation.
belongs to
Symbol Format c

cfg bwni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#symbol_format_cfg_bw

CFG symbol that is displaied black and white notation.
belongs to
Symbol Format c

CfgGBPni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_cfg_gbp

belongs to
Glycan Database c
has facts
has category op glycan binding protein ni
has abbreviation dp "CfgGBP"
has url template dp "http://www.functionalglycomics.org/glycomics/molecule/jsp/viewGbpMolecule.jsp?gbpId=[?id?]&sideMenu=yes"
name ap "CFG Glycan Binding Proteins"

CfgGlycoenzymeni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_cfg_glycoenzymes

belongs to
Glycan Database c
has facts
has category op glycoenyzme ni
has abbreviation dp "CfgGlycoenzyme"
has url template dp "http://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/viewGlycoEnzyme.jsp?gbpId=[?id?]&sideMenu=true&pageType=general"
name ap "CFG Glycosyltransferases DB"

ChEBIni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_chebi

belongs to
Glycan Database c
has facts
has category op chemical compound ni
has abbreviation dp "ChEBI"
has url template dp "http://www.ebi.ac.uk/chebi/advancedSearchFT.do?searchString='[?id?]'"
name ap "Chemical Entities of Biological Interest"

chemicalni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#synthetic_type_chemical

Chemical synthesis that various protecting group manipulations used in the context of glycan synthesis.
belongs to
Synthetic Type c

chemical compoundni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_category_chemical_compound

Database of carbohydrates at the atomic level.
belongs to
Glycan Database Category c

chemoenzymaticni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#synthetic_type_chemoenzymatic

Relying on a hybrid of chemical and enzymatic steps that typically begins with chemical synthesis and ends with enzymatic extension.
belongs to
Synthetic Type c

ChemSpiderni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_chemspider

belongs to
Glycan Database c
has facts
has category op chemical compound ni
has abbreviation dp "ChemSpider"
has url template dp "http://www.chemspider.com/Chemical-Structure.[?id?].html"
name ap "ChemSpider"

chloroni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_chloro

Cl
belongs to
Substituent Type c

csdbni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_csdb

belongs to
Carbohydrate Format c

cysteineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#cysteine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

D-Alanineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-alanine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-arginineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-arginine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-asparagineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-asparagine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-aspartic acidni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-aspartic_acid

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-cysteineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-cysteine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-glutamic acidni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-glutamic_acid

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-glutamineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-glutamine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-glycineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-glycine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-histidineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-histidine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-isoleucineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-isoleucine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-leucineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-leucine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-lysineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-lysine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-methionineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-methionine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-phenylalanineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-phenylalanine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-prolineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-proline

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-selenocysteineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-selenocysteine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-serineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-serine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-threonineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-threonine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-tryptophanni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-tryptophan

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-tyrosineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-tyrosine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

d-valineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#d-valine

belongs to
Amino Acid c
has facts
has absolute configuration op dexter ni

D2Oni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#D2O

Heavy water, formally called deuterium oxide. Deuterium oxide is used in NMR spectroscopy when the solvent of interest is water and the nuclide of interest is hydrogen.
belongs to
Solvent c

deoxyni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification_type_deoxy

Deoxygenation of a position: The OH group is removed and replaced by a hydrogen atom.
belongs to
Core Modification Type c

deoxyni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#linkage_type_deoxy

The substituent is linked directly to the basetype backbone by replacing the OH group.
belongs to
Linkage Type c

dexterni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#absolute_configuration_dexter

belongs to
Absolute Configuration c

DMSOni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#DMSO

Dimethyl sulfoxide (DMSO) is an organosulfur compound with the formula (CH3)2SO. This colorless liquid is an important polar aprotic solvent that dissolves both polar and nonpolar compounds and is miscible in a wide range of organic solvents as well as water.
belongs to
Solvent c

enni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification_type_en

Double bond in the basetype backbone. This modification implies that - unless explicitly stated with a deoxy modification - hydroxyl groups are preserved.
belongs to
Core Modification Type c

enxni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification_type_enx

Double bond in the basetype backbone with unknown deoxygenation pattern.
belongs to
Core Modification Type c

enzymaticni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#synthetic_type_enzymatic

Employing glycosyltransferases and glycosidases in a synthetic schema.
belongs to
Synthetic Type c

erythroni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#erythro

belongs to
Relative Configuration c

ethanolamineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_ethanolamine

NHCH2CH2OH
belongs to
Substituent Type c

ethylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_ethyl

CH2CH3
belongs to
Substituent Type c

exactni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#repeat_attribute_exact

belongs to
Repeat Attribute c

experimentalni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_category_experimental

Database of glycomics experiments such as NMR, MS, array data, etc-
belongs to
Glycan Database Category c

fluoroni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_fluoro

F
belongs to
Substituent Type c

formylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_formyl

CHO
belongs to
Substituent Type c

furanoseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#furanose

A furanose is a five member ring structure containing four carbon atoms and one oxygen atom.
belongs to
Ring Type c

galactoni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#galacto

belongs to
Relative Configuration c

geminalni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification_type_geminal

Loss of stereochemistry due to identical substituents with DEOXY and H_LOSE linkage types at a single position.
belongs to
Core Modification Type c

gluconi back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#gluco

belongs to
Relative Configuration c

glutamic acidni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glutamic_acid

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

glutamineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glutamine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

GlyAffinityni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_glyaffinity

belongs to
Glycan Database c
has facts
has abbreviation dp "GlyAffinity"
has url template dp "http://worm.mpi-cbg.de/affinity/structure.action?ID=[?id?]"
name ap "GlyAffinity"

glycan binding proteinni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_category_glycan_binding_protein

belongs to
Glycan Database Category c

glyceroni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycero

belongs to
Relative Configuration c

glycineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#glycine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

GlycOni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_glyco

belongs to
Glycan Database c
has facts
has abbreviation dp "GlycO"
has url template dp "http://glycomics.ccrc.uga.edu/ontologywebapi/service/glycan/id/[?id?]"
name ap "Glycomics Ontology"

Glyco Storeni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#GlycoStore

belongs to
Glycan Database c

GlycoBase(Dublin)ni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_glycobase_dublin

belongs to
Glycan Database c
has facts
has abbreviation dp "GlycoBase(Dublin)"
name ap "GlycoBase(Dublin)"

GlycoBase(Lille)ni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_glycobase_lille

belongs to
Glycan Database c
has facts
has abbreviation dp "GlycoBase(Lille)"
has url template dp "http://glycobase.univ-lille1.fr/base/view_mol.php?id=[?id?]"
name ap "GlycoBase(Lille)"

glycoctni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_glycoct

belongs to
Carbohydrate Format c

glycoctni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_glycoct

The nomenclature that is used by EUROCarbDB. For more information see www.eurocarbdb.org/recommendations/encoding/.
belongs to
Monosaccharide Notation Scheme c

glycoenyzmeni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_category_glycoenzyme

belongs to
Glycan Database Category c

glycolylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_glycolyl

COCH2OH
belongs to
Substituent Type c

GlycoMapsDBni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_glycomapsdb

belongs to
Glycan Database c
has facts
has category op carbohydrate conformation ni
has abbreviation dp "GlycoMapsDB"
has url template dp "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=[?id?]"
name ap "GlycoMapsDB"

GlycomeDBni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_glycomedb

belongs to
Glycan Database c
has facts
has abbreviation dp "GlycomeDB"
has url template dp "http://www.glycome-db.org/database/showStructure.action?glycomeId=[?id?]"
name ap "GlycomeDB"

GlycoNAVIni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_glyconavi

belongs to
Glycan Database c
has facts
has category op chemical compound ni
has category op experimental ni
has category op synthesis ni
has abbreviation dp "GlycoNAVI"
has url template dp "http://ws.glyconavi.org/DbDetail/moldetail.aspx?moleculeID=[?id?]"
name ap "GlycoNAVI"

GlycoNMRni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_glyconmr

belongs to
Glycan Database c
has facts
has category op experimental ni
has abbreviation dp "GlycoNMR"
has url template dp "http://glycoinfolab.jp/GlycoNMR/GeneralDetail?spc=[?id?]"
name ap "GlycoNMR"

glycosciences deni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_glycosciences_de

The Notation used in the Glycosciences.de web portal. It is based on the CarbBank notation.
belongs to
Monosaccharide Notation Scheme c

GLYCOSCIENCES.deni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_glycosciences_de

belongs to
Glycan Database c
has facts
has category op bibliography ni
has category op structure ni
has category op carbohydrate conformation ni
has category op experimental ni
has category op taxonomy ni
has abbreviation dp "GLYCOSCIENCES.de"
has url template dp "http://www.glycosciences.de/sweetdb/start.php?action=explore_linucsid&linucsid=[?id?]&show=1#struct%0A%20%20%09%09"
name ap "GLYCOSCIENCES.de"

glyde2ni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_glyde2

belongs to
Carbohydrate Format c

guloni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#gulo

belongs to
Relative Configuration c

h at ohni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#linkage_type_h_at_oh

A standard O-linked substituent, i.e. the substituent replaces the hydrogen of an OH group.
belongs to
Linkage Type c

h lossni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#linkage_type_h_loss

The substituent is linked directly to the basetype backbone by replacing the hydrogen atom.
belongs to
Linkage Type c

H+ni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#adduct_ion_h

belongs to
Adduct Ion c

H2 Oni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#H2O

Water
belongs to
Solvent c

histidineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#histidine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

hplcni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_type_hplc

belongs to
Evidence Type c

hydrazine releaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#hydrazine_release

belongs to
Chemical Release c

hydroxymethylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_hydroxymethyl

CH2OH
belongs to
Substituent Type c

idoni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ido

belongs to
Relative Configuration c

iminoni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_imino

NH
belongs to
Substituent Type c

iodoni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_iodo

I
belongs to
Substituent Type c

isoleucineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#isoleucine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

iupac condensedni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_iupac_condensed

belongs to
Carbohydrate Format c

iupac extendedni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_iupac_extended

belongs to
Carbohydrate Format c

iupac shortni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_iupac_short

belongs to
Carbohydrate Format c

JCGGDBni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_jcggdb

belongs to
Glycan Database c
has facts
has abbreviation dp "JCGGDB"
has url template dp "http://jcggdb.jp/idb/jcggdb/[?id?]"
name ap "Japan Consortium for Glycobiology and Glycotechnology DataBase"

kcfni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_kcf

belongs to
Carbohydrate Format c

KEGGni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_kegg

belongs to
Glycan Database c
has facts
has abbreviation dp "KEGG"
has url template dp "http://www.genome.jp/dbget-bin/www_bget?gl:[?id?]"
name ap "Kyoto Encyclopedia of Genes and Genomes"

ketoni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification_type_keto

A carbonyl group in the open chain version of a monosaccharide. This modification is omitted if it is only present at position 1 (standard aldose).
belongs to
Core Modification Type c

laevusni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#absolute_configuration_laevus

belongs to
Absolute Configuration c

lcni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_type_lc

belongs to
Evidence Type c

lc msni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_type_lc_ms

belongs to
Evidence Type c

lc msmsni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_type_lc_msms

belongs to
Evidence Type c

leucineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#leucine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

linearcodeni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_linearcode

belongs to
Carbohydrate Format c

linucsni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_linucs

belongs to
Carbohydrate Format c

lysineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#lysine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

lyxoni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#lyxo

belongs to
Relative Configuration c

mannoni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#manno

belongs to
Relative Configuration c

maxni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#repeat_attribute_max

belongs to
Repeat Attribute c

methionineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#methionine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

methylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_methyl

CH3
belongs to
Substituent Type c

minni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#repeat_attribute_min

belongs to
Repeat Attribute c

monosaccharideni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_category_monosaccharide

Database containing monosaccharide information.
belongs to
Glycan Database Category c

monosaccharide analysisni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide_analysis

belongs to
Evidence Type c

MonosaccharideDBni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_monosaccharidedb

belongs to
Glycan Database c
has facts
has category op monosaccharide ni
has abbreviation dp "MonosaccharideDB"
has url template dp "http://www.monosaccharidedb.org/display_monosaccharide.action?id=[?id?]"
name ap "MonosaccharideDB"

monosaccharidedbni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_monosaccharidedb

MonosaccharideDB's internal notation format. Basetype and substituent names are the same as in GlycoCT, with the exception that 'anhydro' and 'lactone' modifications are included in the basetype here, while they are defined as substituents in GlycoCT. As most glycobiologist and also most carbohydrate databases consider a monosaccharide that contains substituents as one residue, they are defined in this way in MonosaccharideDB as well.
belongs to
Monosaccharide Notation Scheme c

msni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_type_ms

belongs to
Evidence Type c

msmsni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_type_msms

belongs to
Evidence Type c

n acetylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_n_acetyl

NHCOCH3
belongs to
Substituent Type c

n alanineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_n_alanine

NHCOCHNH2CH3
belongs to
Substituent Type c

n dimethylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_n_dimethyl

N(CH3)2
belongs to
Substituent Type c

n ethylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_n_ethyl

NHCH2CH3
belongs to
Substituent Type c

n formylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_n_formyl

NHCHO
belongs to
Substituent Type c

n glycolylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_n_glycolyl

NCOCH2OH
belongs to
Substituent Type c

n methylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_n_methyl

NHCH3
belongs to
Substituent Type c

n succinateni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_n_succinate

NCOCH2CH2COOH
belongs to
Substituent Type c

n sulfateni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_n_sulfate

NHSO3H
belongs to
Substituent Type c

n trifluoroacetylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_n_trifluoroacetyl

NHCOCF3
belongs to
Substituent Type c

n trimethylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_n_trimethyl

N(CH3)3
belongs to
Substituent Type c

Na+ni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#adduct_ion_na

belongs to
Adduct Ion c

nitratni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_nitrat

NO2
belongs to
Substituent Type c

nmrni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#evidence_type_nmr

belongs to
Evidence Type c

noneni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#anomer_none

belongs to
Anomer c

openni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#open

Open chain sugar that does not form a ring.
belongs to
Ring Type c

PDBni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_pdb

belongs to
Glycan Database c
has facts
has abbreviation dp "PDB"
has url template dp "http://www.rcsb.org/pdb/explore/explore.do?structureId=[?id?]"
name ap "RCSB Protein Data Bank"

pdbni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_pdb

The 3-letter residue names as used by the Protein Data Bank (PDB). Unlike most of the other notations, these names cannot be generated automatically by conversion routines but have to be assigned manually by the database administrators. Some PDB residue names that encode carbohydrate residues define disaccharides or oligosaccharides. These are not implemented in MonosaccharideDB, as the scope of this database is on monosaccharide residues.
belongs to
Monosaccharide Notation Scheme c

PFCSDBni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_pfcsdb

belongs to
Glycan Database c
has facts
has category op bibliography ni
has category op structure ni
has category op experimental ni
has category op taxonomy ni
has abbreviation dp "PFCSDB"
has url template dp "http://csdb.glycoscience.ru/plant_fungal/core/search_id.php?mode=record&id_list=[?id?]"
name ap "Plant and Fungal Carbohydrate Structure DataBase"

phenylalanineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#phenylalanine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

phosphateni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_phosphate

PO3H2
belongs to
Substituent Type c

PNGaseA releaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#PNGaseA_release

Release of glycan that is used PNGaseA.
belongs to
Enzymatic Release c

PNGaseF releaseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#PNGaseF_release

Release of glycan that is used PNGaseF.
belongs to
Enzymatic Release c

prolineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#proline

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

PubChemni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_pubchem

belongs to
Glycan Database c
has facts
has category op chemical compound ni
has abbreviation dp "PubChem"
has url template dp "http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=[?id?]"
name ap "PubChem"

pyranoseni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#pyranose

A Pyranose is any cyclic isomer that has a five carbons and one oxygen in a ring of six atoms.
belongs to
Ring Type c

r configni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#linkage_type_r_config

The substituent is linked directly to the basetype backbone by replacing a hydrogen atom at a terminal position, which would be non-chiral without the substituent, resulting in an R-configuration of the carbon.
belongs to
Linkage Type c

r lactateni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_r_lactate

CH3CHCOOH
belongs to
Substituent Type c

r pyruvateni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_r_pyruvate

CH2CCOOH
belongs to
Substituent Type c

reductive beta eliminationni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#reductive_beta_elimination

Beta elimination that is used reducing a get for stabilize glycan.
belongs to
Chemical Release c

riboni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ribo

belongs to
Relative Configuration c

s configni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#linkage_type_s_config

Same as R_CONFIG, but resulting in an S-Configuration of the carbon.
belongs to
Linkage Type c

s lactateni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_s_lactate

CH3CHCOOH
belongs to
Substituent Type c

s methylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_s_methyl

SCH3
belongs to
Substituent Type c

s pyruvateni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_s_pyruvate

CH2CCOOH
belongs to
Substituent Type c

selenoni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_seleno

SeH
belongs to
Substituent Type c

selenocysteineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#selenocysteine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

serineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#serine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

SMSAni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_smsa

belongs to
Glycan Database c
has facts
has category op chemical compound ni
has abbreviation dp "SMSA"
has url template dp "http://ws.glyconavi.org/SM/id.php?Id=[?id?]"
name ap "Small Molecule for Spectral Analysis"

spni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification_type_sp

Triple bond to a substituent.
belongs to
Core Modification Type c

sp2ni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification_type_sp2

Double bond to a substituent.
belongs to
Core Modification Type c

structureni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_category_cabohydrate_structure

Database containing glycan structure information.
belongs to
Glycan Database Category c

sulfateni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_sulfate

SO3H
belongs to
Substituent Type c

synthesisni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_category_synthesis

belongs to
Glycan Database Category c

taloni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#talo

belongs to
Relative Configuration c

taxonomyni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_category_taxonomy

Taxonomical information regarding glycans are available.
belongs to
Glycan Database Category c

telluroni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_telluro

TeH
belongs to
Substituent Type c

textni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#symbol_format_text

A glycan structure is displayed by text-only form.
belongs to
Symbol Format c

thioni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_thio

SH
belongs to
Substituent Type c

threoni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#threo

belongs to
Relative Configuration c

threonineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#threonine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

tissueni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_category_tissue

belongs to
Glycan Database Category c

trifluoroacetylni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_trifluoroacetyl

COCF3
belongs to
Substituent Type c

tryptophanni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#tryptophan

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

tyrosineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#tyrosine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

UniCarb-DBni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_unicarb_db

belongs to
Glycan Database c
has facts
has category op structure ni
has category op experimental ni
has abbreviation dp "UniCarb-DB"
has url template dp "http://www.unicarb-db.org/structure/[?id?]"
name ap "UniCarb-DB"

UniCarbKBni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#database_unicarbkb

belongs to
Glycan Database c
has facts
has category op bibliography ni
has category op structure ni
has category op experimental ni
has category op glycoenyzme ni
has category op taxonomy ni
has category op tissue ni
has abbreviation dp "UniCarbKB"
has url template dp "http://www.unicarbkb.org/structure/[?id?]"
name ap "UniCarbKB"

unknownni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#absolute_configuration_unknown

belongs to
Absolute Configuration c

unknownni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#anomer_unknown

belongs to
Anomer c

unknownni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#repeat_attribute_unknown

belongs to
Repeat Attribute c

unknownni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ring_type_unknown

A monosaccharide whose ring type is unknown.
belongs to
Ring Type c

uoxfni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#symbol_format_uoxf

A symbol is Oxford (UOXF) notations.
belongs to
Symbol Format c

uoxfni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#uoxf

belongs to
Carbohydrate Format c

uoxf bwni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#symbol_format_uoxf_bw

UOXF symbol that is displayed black and white notation.
belongs to
Symbol Format c

uplcni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#uplc

belongs to
Evidence Type c

valineni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#valine

belongs to
Amino Acid c
has facts
has absolute configuration op laevus ni

wurcsni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_wurcs

belongs to
Carbohydrate Format c

xni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#configuration_x

belongs to
Configuration c

Xni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ms_fragment_type_x

belongs to
MS Fragment Type c

x lactateni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_x_lactate

CH3CHCOOH
belongs to
Substituent Type c

x pyruvateni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#substituent_type_x_pyruvate

CH2CCOOH
belongs to
Substituent Type c

xyloni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#xylo

belongs to
Relative Configuration c

Yni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ms_fragment_type_y

belongs to
MS Fragment Type c

ynni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#core_modification_type_yn

Triple bond in the basetype backbone.
belongs to
Core Modification Type c

Zni back to ToC or Named Individual ToC

IRI: http://purl.jp/bio/12/glyco/glycan#ms_fragment_type_z

belongs to
MS Fragment Type c

Legend back to ToC

c: Classes
op: Object Properties
dp: Data Properties
ni: Named Individuals

References back to ToC

Add your references here. It is recommended to have them as a list.

Acknowledgments back to ToC

The authors would like to thank Silvio Peroni for developing LODE, a Live OWL Documentation Environment, which is used for representing the Cross Referencing Section of this document and Daniel Garijo for developing Widoco, the program used to create the template used in this documentation.